Variant report

Variant	rs58815002
Chromosome Location	chr11:66876368-66876369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12417887	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12418591	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12419315	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420479	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420556	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420594	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420763	1.00[EUR][1000 genomes]
rs12421536	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17148080	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4084238	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4930411	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4930414	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930415	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61525626	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66867800-66880800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66871600-66884200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66871800-66880400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:66873600-66880400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:66873800-66878400	Weak transcription	Fetal Heart	heart
6	chr11:66873800-66878800	Weak transcription	Right Atrium	heart
7	chr11:66874200-66878400	Weak transcription	Fetal Thymus	thymus
8	chr11:66874600-66878600	Weak transcription	GM12878-XiMat	blood
9	chr11:66875400-66882600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:66875600-66880600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:66875600-66880600	Weak transcription	K562	blood
12	chr11:66876200-66876400	Enhancers	Rectal Smooth Muscle	rectum
13	chr11:66876200-66878400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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