Variant report

Variant	rs4570140
Chromosome Location	chr8:58661142-58661143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-3	chr8:58660500-58662754	XLOC_006809
2	lnc-FAM110B-3	chr8:58660500-58662758	ENSG00000254139

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10808685	0.87[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808686	0.87[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957020	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12543857	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13255034	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13276835	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4397388	0.87[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4425741	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4427157	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4738610	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4738612	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4738613	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471643	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7000252	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7014482	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58658800-58661400	Weak transcription	Spleen	Spleen
2	chr8:58658800-58663000	Weak transcription	HSMMtube	muscle
3	chr8:58658800-58663200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:58659000-58663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:58660200-58661800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:58660400-58661200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:58660400-58661200	Flanking Active TSS	Rectal Smooth Muscle	rectum
8	chr8:58660400-58661400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:58660400-58661400	Enhancers	Brain Germinal Matrix	brain
10	chr8:58660400-58661400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:58660400-58661400	Flanking Active TSS	Fetal Lung	lung
12	chr8:58660400-58661400	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr8:58660400-58661400	Active TSS	Monocytes-CD14+_RO01746	blood
14	chr8:58660400-58661600	Active TSS	Brain Substantia Nigra	brain
15	chr8:58660400-58661800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:58660400-58661800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:58660600-58661200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr8:58660600-58661200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:58660600-58661200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:58660600-58661200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:58660600-58661200	Active TSS	Brain Angular Gyrus	brain
22	chr8:58660600-58661200	Active TSS	Colonic Mucosa	Colon
23	chr8:58660600-58661200	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr8:58660600-58661400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
25	chr8:58660600-58661400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:58660600-58661400	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr8:58660600-58661400	Active TSS	Ovary	ovary
28	chr8:58660600-58661400	Active TSS	Right Atrium	heart
29	chr8:58660600-58661600	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr8:58660600-58661600	Active TSS	Stomach Smooth Muscle	stomach
31	chr8:58660600-58661800	Enhancers	Fetal Brain Female	brain
32	chr8:58660600-58662000	Enhancers	Fetal Brain Male	brain
33	chr8:58660800-58661200	Active TSS	Primary hematopoietic stem cells	blood
34	chr8:58660800-58661200	Active TSS	Duodenum Mucosa	Duodenum
35	chr8:58660800-58661200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr8:58660800-58661200	Active TSS	Fetal Intestine Small	intestine
37	chr8:58660800-58661200	Flanking Active TSS	Fetal Muscle Leg	muscle
38	chr8:58660800-58661200	Flanking Active TSS	Fetal Stomach	stomach
39	chr8:58660800-58661200	Enhancers	Lung	lung
40	chr8:58660800-58661200	Bivalent/Poised TSS	Psoas Muscle	Psoas
41	chr8:58660800-58661200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr8:58660800-58661200	Active TSS	HSMM	muscle
43	chr8:58660800-58661400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr8:58660800-58661400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr8:58660800-58661400	Enhancers	Primary B cells from peripheral blood	blood
46	chr8:58660800-58661400	Active TSS	Brain Anterior Caudate	brain
47	chr8:58660800-58661400	Active TSS	Brain Cingulate Gyrus	brain
48	chr8:58660800-58661400	Active TSS	Colon Smooth Muscle	Colon
49	chr8:58660800-58661400	Active TSS	Fetal Muscle Trunk	muscle
50	chr8:58660800-58661400	Active TSS	GM12878-XiMat	blood

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