Variant report

Variant	rs12543857
Chromosome Location	chr8:58666308-58666309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10808685	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10808686	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10957020	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12676528	0.94[ASN][1000 genomes]
rs12680410	0.81[ASN][1000 genomes]
rs13255034	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13256714	0.95[ASN][1000 genomes]
rs13263055	0.89[ASN][1000 genomes]
rs13276835	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4397388	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4425741	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4427157	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4546648	0.81[ASN][1000 genomes]
rs4570140	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4629855	0.81[ASN][1000 genomes]
rs4738610	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4738612	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4738613	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6471643	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7000252	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7014482	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9650186	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58665600-58666400	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links