Variant report

Variant	rs13263055
Chromosome Location	chr8:58659654-58659655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10090263	0.90[EUR][1000 genomes]
rs12543857	0.89[ASN][1000 genomes]
rs12676528	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12680410	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13256714	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4266637	0.81[AMR][1000 genomes]
rs4546648	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4629855	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738611	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6471649	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9650186	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58651800-58660400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:58654200-58660400	Weak transcription	Fetal Kidney	kidney
3	chr8:58655000-58660400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:58658200-58660400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:58658400-58660400	Weak transcription	Brain Hippocampus Middle	brain
6	chr8:58658400-58660400	Weak transcription	Ovary	ovary
7	chr8:58658400-58660400	Weak transcription	GM12878-XiMat	blood
8	chr8:58658400-58660600	Weak transcription	Colonic Mucosa	Colon
9	chr8:58658600-58660200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:58658600-58660400	Weak transcription	Fetal Lung	lung
11	chr8:58658600-58660400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr8:58658600-58660400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr8:58658600-58660400	Weak transcription	Right Atrium	heart
14	chr8:58658600-58660600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:58658600-58660800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:58658800-58660200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:58658800-58660200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:58658800-58660200	Weak transcription	Fetal Stomach	stomach
19	chr8:58658800-58660200	Weak transcription	NHDF-Ad	bronchial
20	chr8:58658800-58660400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:58658800-58660400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr8:58658800-58660400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:58658800-58660400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr8:58658800-58660400	Weak transcription	NHLF	lung
25	chr8:58658800-58660600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:58658800-58660600	Weak transcription	Brain Anterior Caudate	brain
27	chr8:58658800-58660600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr8:58658800-58660600	Weak transcription	Osteobl	bone
29	chr8:58658800-58660800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr8:58658800-58660800	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:58658800-58660800	Weak transcription	Thymus	Thymus
32	chr8:58658800-58661000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr8:58658800-58661400	Weak transcription	Spleen	Spleen
34	chr8:58658800-58663000	Weak transcription	HSMMtube	muscle
35	chr8:58658800-58663200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:58659000-58660200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:58659000-58660400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:58659000-58660400	Weak transcription	Adipose Nuclei	Adipose
39	chr8:58659000-58660600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr8:58659000-58660600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr8:58659000-58660600	Weak transcription	HSMM	muscle
42	chr8:58659000-58660800	Weak transcription	Primary T cells from cord blood	blood
43	chr8:58659000-58663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:58659200-58660400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links