Variant report
| Variant | rs4738611 |
|---|---|
| Chromosome Location | chr8:58640379-58640380 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11785847 | 0.89[ASN][1000 genomes] |
| rs12676528 | 0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12680410 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13248067 | 0.90[ASN][1000 genomes] |
| rs13254656 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13255034 | 0.81[JPT][hapmap] |
| rs13256714 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13258879 | 0.90[ASN][1000 genomes] |
| rs13263055 | 0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13263280 | 0.89[ASN][1000 genomes] |
| rs34163390 | 0.90[ASN][1000 genomes] |
| rs4131859 | 0.90[ASN][1000 genomes] |
| rs4266637 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4397388 | 0.82[JPT][hapmap] |
| rs4546648 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4629855 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4737466 | 0.88[ASN][1000 genomes] |
| rs6471640 | 0.90[ASN][1000 genomes] |
| rs6471649 | 0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs9650186 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533217 | chr8:57991065-58789001 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv890937 | chr8:58600994-58695807 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:58640000-58649400 | Weak transcription | Aorta | Aorta |
