Variant report

Variant	rs12676528
Chromosome Location	chr8:58661978-58661979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-3	chr8:58660500-58662754	XLOC_006809
2	lnc-FAM110B-3	chr8:58660500-58662758	ENSG00000254139

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10090263	0.91[EUR][1000 genomes]
rs12543857	0.94[ASN][1000 genomes]
rs12680410	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13256714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13263055	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4266637	0.81[AMR][1000 genomes]
rs4546648	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4629855	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4738611	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6471649	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9650186	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58658800-58663000	Weak transcription	HSMMtube	muscle
2	chr8:58658800-58663200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:58659000-58663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:58660600-58662000	Enhancers	Fetal Brain Male	brain
5	chr8:58661200-58662000	Enhancers	Fetal Muscle Leg	muscle
6	chr8:58661200-58663200	Weak transcription	HSMM	muscle
7	chr8:58661400-58662000	Enhancers	Brain Cingulate Gyrus	brain
8	chr8:58661400-58662600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:58661400-58662800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:58661400-58663000	Weak transcription	Osteobl	bone
11	chr8:58661400-58663200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:58661400-58663800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:58661600-58663400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:58661600-58665600	Weak transcription	Fetal Lung	lung
15	chr8:58661800-58662000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:58661800-58662000	Active TSS	Brain Hippocampus Middle	brain
17	chr8:58661800-58662000	Enhancers	NHDF-Ad	bronchial
18	chr8:58661800-58662800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:58661800-58662800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:58661800-58662800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:58661800-58663000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr8:58661800-58663000	Weak transcription	Fetal Stomach	stomach
23	chr8:58661800-58663000	Weak transcription	Left Ventricle	heart
24	chr8:58661800-58663200	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:58661800-58663400	Weak transcription	Fetal Brain Female	brain
26	chr8:58661800-58663400	Weak transcription	Right Atrium	heart

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