Variant report

Variant	rs4571472
Chromosome Location	chr5:15721360-15721361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11133822	0.83[MKK][hapmap]
rs11748700	0.83[YRI][hapmap]
rs11748790	0.83[YRI][hapmap]
rs12653727	0.89[YRI][hapmap]
rs13170407	0.83[YRI][hapmap]
rs13358928	0.82[YRI][hapmap]
rs17602392	0.83[CEU][hapmap];0.96[YRI][hapmap]
rs17602470	0.83[CEU][hapmap];0.86[YRI][hapmap]
rs4133004	0.83[YRI][hapmap]
rs4235556	0.83[CEU][hapmap]
rs4289558	0.83[CEU][hapmap]
rs4407633	0.83[CEU][hapmap];0.84[MKK][hapmap]
rs4435862	0.96[YRI][hapmap];0.82[AMR][1000 genomes]
rs4505949	0.83[CEU][hapmap]
rs4582274	0.83[CEU][hapmap]
rs4701642	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4702099	0.81[MKK][hapmap]
rs4702103	0.89[YRI][hapmap]
rs6875955	0.83[CEU][hapmap];0.81[MKK][hapmap]
rs6898184	0.82[CEU][hapmap];0.82[YRI][hapmap]
rs7704277	0.83[YRI][hapmap]
rs7707563	0.82[YRI][hapmap]
rs7709102	0.85[YRI][hapmap]
rs924455	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv432718	chr5:15688927-15723346	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv2760924	chr5:15716127-15730060	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv980965	chr5:15719140-15731242	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv597270	chr5:15719402-15723633	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv597276	chr5:15719611-15721360	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv597281	chr5:15719750-15721360	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv597285	chr5:15719769-15721360	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15717400-15721400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:15717600-15721400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:15718800-15721600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:15719200-15725800	Weak transcription	Fetal Brain Male	brain
5	chr5:15720400-15721400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:15720400-15721400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:15720400-15721400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:15720400-15721400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:15720400-15722000	Weak transcription	Left Ventricle	heart
10	chr5:15720600-15724200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:15720600-15730000	Weak transcription	Fetal Heart	heart
12	chr5:15720800-15724000	Weak transcription	NHDF-Ad	bronchial
13	chr5:15721000-15721400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:15721000-15722200	Weak transcription	HUVEC	blood vessel
15	chr5:15721200-15721400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr5:15721200-15721600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:15721200-15721800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:15721200-15721800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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