Variant report

Variant	rs4575410
Chromosome Location	chr13:39436573-39436574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12429381	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12429382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1945503	0.84[EUR][1000 genomes]
rs1945508	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2184141	0.81[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2225623	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4473057	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6563648	0.80[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7139901	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73186708	0.90[ASN][1000 genomes]
rs7325590	0.92[EUR][1000 genomes]
rs7327529	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7337135	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7995863	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7996155	0.92[EUR][1000 genomes]
rs8002781	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9315622	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9566368	0.97[ASN][1000 genomes]
rs9566371	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9576629	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576630	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9576632	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9576634	0.84[EUR][1000 genomes]
rs9594304	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:39421600-39442600	Weak transcription	Fetal Intestine Small	intestine
6	chr13:39422200-39443200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:39423400-39442600	Weak transcription	Liver	Liver
8	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:39430600-39458000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr13:39430600-39462400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:39431000-39439400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:39431600-39438800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr13:39432200-39458200	Weak transcription	Gastric	stomach
15	chr13:39432600-39468600	Weak transcription	Psoas Muscle	Psoas
16	chr13:39433800-39451000	Weak transcription	Fetal Kidney	kidney
17	chr13:39433800-39456600	Weak transcription	Fetal Stomach	stomach
18	chr13:39434400-39442600	Weak transcription	Pancreas	Pancrea
19	chr13:39434400-39446200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr13:39434800-39448800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:39435200-39437000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:39436000-39445200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr13:39436000-39457800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr13:39436400-39436600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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