Variant report

Variant	rs9566371
Chromosome Location	chr13:39448344-39448345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39430468..39433096-chr13:39447129..39449184,2	MCF-7	breast:
2	chr13:39442388..39444507-chr13:39446931..39448691,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12429381	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12429382	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1945503	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1945508	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2184141	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2225623	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4473057	0.86[EUR][1000 genomes]
rs4575410	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6563648	0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7139901	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73186708	0.98[ASN][1000 genomes]
rs7325590	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7327529	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7337135	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7995863	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996155	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8002781	0.94[EUR][1000 genomes]
rs9315622	0.94[EUR][1000 genomes]
rs9566368	0.91[ASN][1000 genomes]
rs9576629	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9576630	0.96[EUR][1000 genomes]
rs9576632	0.96[EUR][1000 genomes]
rs9576634	0.86[EUR][1000 genomes]
rs9594304	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:39430600-39458000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:39430600-39462400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr13:39432200-39458200	Weak transcription	Gastric	stomach
10	chr13:39432600-39468600	Weak transcription	Psoas Muscle	Psoas
11	chr13:39433800-39451000	Weak transcription	Fetal Kidney	kidney
12	chr13:39433800-39456600	Weak transcription	Fetal Stomach	stomach
13	chr13:39434800-39448800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:39436000-39457800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:39438800-39450000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr13:39443000-39448400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:39443200-39450200	Weak transcription	Pancreas	Pancrea
18	chr13:39443400-39448800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:39443600-39452800	Weak transcription	Liver	Liver
20	chr13:39445600-39449600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr13:39445800-39449400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr13:39446400-39448600	Weak transcription	Brain Substantia Nigra	brain
23	chr13:39446400-39458000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr13:39447000-39448400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr13:39447000-39457800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr13:39447000-39458800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr13:39447000-39462400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr13:39447000-39462400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr13:39447200-39449000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr13:39447400-39448600	Weak transcription	Brain Inferior Temporal Lobe	brain

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