Variant report

Variant	rs4577683
Chromosome Location	chr5:114212766-114212767
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10039781	0.84[ASN][1000 genomes]
rs10059569	0.93[ASN][1000 genomes]
rs10478215	0.89[ASN][1000 genomes]
rs11241296	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11954634	0.84[ASN][1000 genomes]
rs13175861	0.87[ASN][1000 genomes]
rs1453011	0.88[ASN][1000 genomes]
rs1904337	0.82[ASN][1000 genomes]
rs2199748	0.89[ASN][1000 genomes]
rs28424064	0.86[ASN][1000 genomes]
rs28454683	0.86[ASN][1000 genomes]
rs4499823	0.84[ASN][1000 genomes]
rs4705696	0.84[ASN][1000 genomes]
rs6881868	0.92[ASN][1000 genomes]
rs6897730	0.91[ASN][1000 genomes]
rs7701456	0.84[ASN][1000 genomes]
rs7724117	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv436463	chr5:114207265-114217234	Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114212600-114212800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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