Variant report

Variant	rs6897730
Chromosome Location	chr5:114193568-114193569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114191563..114193194-chr5:114193379..114196328,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10039629	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10059569	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10477526	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10478215	0.83[ASN][1000 genomes]
rs11241296	0.85[ASN][1000 genomes]
rs13175861	0.81[ASN][1000 genomes]
rs13360458	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1479347	0.87[EUR][1000 genomes]
rs1904337	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2199748	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28454683	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4131437	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs4577683	0.91[ASN][1000 genomes]
rs6881868	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7724117	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114192600-114193600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:114193000-114193800	Enhancers	Brain Angular Gyrus	brain
3	chr5:114193000-114194000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:114193000-114194000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr5:114193000-114196600	Enhancers	Fetal Brain Male	brain
6	chr5:114193200-114193600	Enhancers	Brain Hippocampus Middle	brain
7	chr5:114193200-114193600	Enhancers	Fetal Muscle Leg	muscle
8	chr5:114193200-114193800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:114193400-114193600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:114193400-114193600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:114193400-114193600	Enhancers	Brain Cingulate Gyrus	brain
12	chr5:114193400-114193600	Enhancers	Fetal Muscle Trunk	muscle
13	chr5:114193400-114193600	Enhancers	Psoas Muscle	Psoas
14	chr5:114193400-114193800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:114193400-114193800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr5:114193400-114194000	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr5:114193400-114194000	Active TSS	Brain Substantia Nigra	brain
18	chr5:114193400-114194000	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr5:114193400-114194200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr5:114193400-114194200	Flanking Active TSS	Fetal Brain Female	brain
21	chr5:114193400-114194400	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr5:114193400-114194400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr5:114193400-114194800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:114193400-114195200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr5:114193400-114195400	Enhancers	Fetal Stomach	stomach

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