Variant report

Variant	rs4577868
Chromosome Location	chr7:39311045-39311046
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11514783	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4273761	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4302751	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4469355	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73126493	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73128418	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7793509	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39306200-39311800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:39310200-39312000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:39310600-39311200	Enhancers	Fetal Brain Male	brain
4	chr7:39310600-39311400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:39310600-39312200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:39310800-39311400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:39310800-39311400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:39310800-39311400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
9	chr7:39310800-39311400	Enhancers	Fetal Brain Female	brain
10	chr7:39310800-39312000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:39310800-39312200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:39310800-39312200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:39311000-39311400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:39311000-39311400	Enhancers	Fetal Muscle Leg	muscle
15	chr7:39311000-39311400	Active TSS	Stomach Smooth Muscle	stomach
16	chr7:39311000-39311400	Enhancers	HSMMtube	muscle
17	chr7:39311000-39312000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:39311000-39312000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:39311000-39312000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:39311000-39312000	Enhancers	Fetal Muscle Trunk	muscle
21	chr7:39311000-39312200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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