Variant report

Variant	rs4579100
Chromosome Location	chr4:151296912-151296913
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10027598	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10029305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11099762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331720	0.82[AMR][1000 genomes]
rs12512600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12648307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13105658	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13111441	0.81[EUR][1000 genomes]
rs13144332	0.81[EUR][1000 genomes]
rs1504780	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1504781	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17504421	0.80[AMR][1000 genomes]
rs1910720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1910721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1966052	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2134958	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2134960	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2135780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2174366	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2884894	0.86[EUR][1000 genomes]
rs4374604	0.91[ASN][1000 genomes]
rs4396971	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4639047	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6535736	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6832193	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6834928	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6848343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6857952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7667511	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7670869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674989	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7676219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7678429	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7678875	0.90[EUR][1000 genomes]
rs7689850	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7698007	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7698975	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs905767	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9307876	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv880260	chr4:151214038-151331191	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151243000-151312000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:151244200-151300600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:151262400-151311200	Weak transcription	Primary T cells from cord blood	blood
4	chr4:151269800-151300600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:151272000-151298600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:151272000-151371400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:151279200-151298000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:151285600-151297600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:151286600-151355600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:151289200-151300200	Weak transcription	Fetal Kidney	kidney
11	chr4:151289400-151297000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:151290200-151306400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:151290200-151367400	Weak transcription	K562	blood
14	chr4:151291200-151301200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:151291400-151298400	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:151291800-151314200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr4:151292200-151302400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:151292400-151306800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:151292400-151361000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:151293600-151307200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:151293800-151297200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:151294200-151314000	Weak transcription	Fetal Intestine Small	intestine
23	chr4:151294400-151304400	Weak transcription	Fetal Intestine Large	intestine
24	chr4:151295200-151297200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:151296000-151317200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links