Variant report

Variant	rs7689850
Chromosome Location	chr4:151349664-151349665
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr4:151349656-151349678	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000248521	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10027598	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10029305	0.84[EUR][1000 genomes]
rs11099762	0.84[EUR][1000 genomes]
rs11099766	0.82[EUR][1000 genomes]
rs11931175	0.82[EUR][1000 genomes]
rs12331720	0.86[AFR][1000 genomes]
rs12512600	0.84[EUR][1000 genomes]
rs12648307	0.84[EUR][1000 genomes]
rs13105658	0.84[EUR][1000 genomes]
rs13111441	0.87[EUR][1000 genomes]
rs13144332	0.87[EUR][1000 genomes]
rs1504780	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1504781	0.87[EUR][1000 genomes]
rs1532822	0.82[EUR][1000 genomes]
rs1910720	0.84[EUR][1000 genomes]
rs1910721	0.84[EUR][1000 genomes]
rs1966052	0.93[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2134958	0.84[EUR][1000 genomes]
rs2134960	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2135780	0.84[EUR][1000 genomes]
rs2174366	0.82[EUR][1000 genomes]
rs2884894	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4396971	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4431210	1.00[CEU][hapmap]
rs4579100	0.84[EUR][1000 genomes]
rs4639047	0.84[EUR][1000 genomes]
rs4696186	0.82[EUR][1000 genomes]
rs4696537	1.00[CEU][hapmap]
rs6535736	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6832193	0.84[EUR][1000 genomes]
rs6834928	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6847725	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs6848343	0.84[EUR][1000 genomes]
rs6857952	0.84[EUR][1000 genomes]
rs7356294	0.84[EUR][1000 genomes]
rs7666634	0.93[AFR][1000 genomes]
rs7667511	0.93[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.92[MEX][hapmap];0.99[MKK][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7670869	0.84[EUR][1000 genomes]
rs7674989	0.87[EUR][1000 genomes]
rs7676219	0.84[EUR][1000 genomes]
rs7678429	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7698007	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7698975	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs905767	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151272000-151371400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:151286600-151355600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:151290200-151367400	Weak transcription	K562	blood
4	chr4:151292400-151361000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:151313200-151358200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:151313600-151358000	Weak transcription	GM12878-XiMat	blood
7	chr4:151315800-151359400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:151317400-151358800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:151319000-151371000	Weak transcription	Left Ventricle	heart
10	chr4:151331400-151358800	Weak transcription	Liver	Liver
11	chr4:151332800-151353000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:151333000-151357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:151333000-151408000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:151333200-151351600	Weak transcription	Primary B cells from cord blood	blood
15	chr4:151333600-151355600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:151335400-151352800	Weak transcription	Esophagus	oesophagus
17	chr4:151337200-151363200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:151343200-151350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:151343600-151356400	Weak transcription	Primary T cells from cord blood	blood
20	chr4:151344200-151353400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:151344800-151350400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:151344800-151355200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:151344800-151355600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:151344800-151355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:151344800-151355600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:151344800-151356200	Weak transcription	Spleen	Spleen
27	chr4:151344800-151361600	Weak transcription	Gastric	stomach
28	chr4:151344800-151387200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:151345000-151355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:151345000-151355800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr4:151345000-151357600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:151345000-151363000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:151345000-151366200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr4:151345000-151367000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:151345000-151389000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:151345200-151355600	Weak transcription	Fetal Intestine Small	intestine
37	chr4:151345200-151365800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr4:151345200-151371200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:151346000-151355600	Weak transcription	Fetal Intestine Large	intestine
40	chr4:151346600-151360600	Weak transcription	Colon Smooth Muscle	Colon
41	chr4:151349600-151350200	Enhancers	Pancreatic Islets	Pancreatic Islet

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