Variant report

Variant	rs11099766
Chromosome Location	chr4:151437241-151437242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151430964..151434350-chr4:151435972..151438287,3	K562	blood:
2	chr4:151433373..151435813-chr4:151436387..151438412,2	K562	blood:
3	chr4:151435911..151437740-chr4:151439092..151440946,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10025007	0.80[EUR][1000 genomes]
rs10025414	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs10027598	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10029305	0.83[ASN][1000 genomes]
rs10155442	0.82[EUR][1000 genomes]
rs11099762	0.83[ASN][1000 genomes]
rs11099773	0.82[EUR][1000 genomes]
rs11099774	0.82[EUR][1000 genomes]
rs11931175	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331720	0.88[ASN][1000 genomes]
rs12508892	0.89[GIH][hapmap];1.00[TSI][hapmap]
rs12512600	0.83[ASN][1000 genomes]
rs12648307	0.83[ASN][1000 genomes]
rs13105658	0.83[ASN][1000 genomes]
rs13111441	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13144332	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504780	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1504781	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1504784	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1532822	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027030	1.00[CEU][hapmap]
rs1910720	0.83[ASN][1000 genomes]
rs1966052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2001835	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2134958	0.83[ASN][1000 genomes]
rs2134960	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2174366	0.83[ASN][1000 genomes]
rs2360070	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28451271	0.82[EUR][1000 genomes]
rs2884894	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4235250	0.82[EUR][1000 genomes]
rs4269161	0.80[EUR][1000 genomes]
rs4270570	0.82[EUR][1000 genomes]
rs4289432	0.80[EUR][1000 genomes]
rs4311291	0.82[EUR][1000 genomes]
rs4355367	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs4376124	0.82[EUR][1000 genomes]
rs4396971	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4417951	0.80[EUR][1000 genomes]
rs4431210	1.00[CEU][hapmap]
rs4450905	0.82[EUR][1000 genomes]
rs4476581	0.80[EUR][1000 genomes]
rs4533751	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs4619872	0.82[EUR][1000 genomes]
rs4619873	0.82[EUR][1000 genomes]
rs4639047	0.83[ASN][1000 genomes]
rs4696186	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696220	1.00[CEU][hapmap];0.80[GIH][hapmap];0.82[TSI][hapmap]
rs4696537	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs62344739	0.81[AMR][1000 genomes]
rs6535736	0.83[ASN][1000 genomes]
rs6832193	0.83[ASN][1000 genomes]
rs6834928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835367	0.82[GIH][hapmap]
rs6836017	1.00[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap]
rs6841787	0.94[AMR][1000 genomes]
rs6846154	0.82[EUR][1000 genomes]
rs6847725	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap]
rs6848343	0.83[ASN][1000 genomes]
rs6857952	0.83[ASN][1000 genomes]
rs7667511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7670869	0.83[ASN][1000 genomes]
rs7671685	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7674989	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676219	0.83[ASN][1000 genomes]
rs7678429	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7689850	1.00[CEU][hapmap];0.94[GIH][hapmap];0.82[EUR][1000 genomes]
rs7698007	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7698975	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs905767	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs952225	0.82[AFR][1000 genomes]
rs9790393	0.80[EUR][1000 genomes]
rs9995388	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv3445246	chr4:151422396-151447936	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151385400-151442200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:151409000-151456600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:151410000-151444400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:151422600-151438400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:151422800-151474600	Weak transcription	Primary B cells from cord blood	blood
6	chr4:151431200-151439600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:151431400-151439400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:151431600-151439400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:151431800-151439200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:151431800-151439800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:151432400-151439200	Weak transcription	NHEK	skin
12	chr4:151433000-151439400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:151433800-151444200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:151435800-151452600	Weak transcription	Primary T cells from cord blood	blood
15	chr4:151436000-151443800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:151436200-151452000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:151436600-151439400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:151436800-151439200	Weak transcription	A549	lung
19	chr4:151436800-151439200	Weak transcription	Hela-S3	cervix
20	chr4:151436800-151439400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:151436800-151439600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:151436800-151439600	Weak transcription	HUVEC	blood vessel

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