Variant report

Variant	rs1504784
Chromosome Location	chr4:151487145-151487146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151485955..151488684-chr4:151492504..151494572,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10000491	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10000655	0.92[EUR][1000 genomes]
rs10025007	0.95[EUR][1000 genomes]
rs10025414	0.93[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10027598	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10155442	0.97[EUR][1000 genomes]
rs10857247	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11099766	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11099773	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11099774	0.97[EUR][1000 genomes]
rs11931175	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12108435	0.85[EUR][1000 genomes]
rs12331720	0.82[ASN][1000 genomes]
rs12499862	0.92[EUR][1000 genomes]
rs12508892	0.89[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs12642528	0.85[EUR][1000 genomes]
rs13103943	0.82[EUR][1000 genomes]
rs13111441	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13144332	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1504780	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1504781	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1504783	0.89[AFR][1000 genomes]
rs1532822	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17027030	1.00[CEU][hapmap]
rs17027034	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs1857751	0.88[AFR][1000 genomes]
rs1966052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2001835	0.89[ASN][1000 genomes]
rs2134960	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2360070	0.82[AMR][1000 genomes]
rs28451271	0.97[EUR][1000 genomes]
rs2884894	0.84[EUR][1000 genomes]
rs4235250	0.97[EUR][1000 genomes]
rs4269161	0.95[EUR][1000 genomes]
rs4270570	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4289432	0.95[EUR][1000 genomes]
rs4311291	0.97[EUR][1000 genomes]
rs4327465	0.90[EUR][1000 genomes]
rs4328896	0.92[EUR][1000 genomes]
rs4330340	0.92[EUR][1000 genomes]
rs4355367	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs4358377	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4376124	0.97[EUR][1000 genomes]
rs4396971	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4396972	0.95[EUR][1000 genomes]
rs4401437	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4417951	0.95[EUR][1000 genomes]
rs4431210	1.00[CEU][hapmap]
rs4450905	0.97[EUR][1000 genomes]
rs4476581	0.95[EUR][1000 genomes]
rs4533751	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs4568218	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4604037	0.92[EUR][1000 genomes]
rs4619872	0.97[EUR][1000 genomes]
rs4619873	0.97[EUR][1000 genomes]
rs4696186	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4696214	0.87[EUR][1000 genomes]
rs4696220	1.00[CEU][hapmap];0.80[GIH][hapmap];0.82[TSI][hapmap];0.84[YRI][hapmap]
rs4696537	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4696629	0.92[EUR][1000 genomes]
rs68016242	0.92[EUR][1000 genomes]
rs6818709	0.92[EUR][1000 genomes]
rs6825990	0.90[EUR][1000 genomes]
rs6826248	0.92[EUR][1000 genomes]
rs6832498	0.85[EUR][1000 genomes]
rs6834928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6835367	0.82[GIH][hapmap]
rs6836017	1.00[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap];0.84[YRI][hapmap]
rs6839548	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6841787	0.90[AMR][1000 genomes]
rs6846154	0.97[EUR][1000 genomes]
rs6847725	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6851587	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6852493	0.95[EUR][1000 genomes]
rs6855667	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6858267	0.95[EUR][1000 genomes]
rs7667511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7671045	0.81[EUR][1000 genomes]
rs7671685	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7674861	0.85[AFR][1000 genomes]
rs7674989	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7678429	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7686220	0.90[EUR][1000 genomes]
rs7689850	1.00[CEU][hapmap];0.94[GIH][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.85[YRI][hapmap]
rs7692615	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7698007	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7698975	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs905767	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs971640	1.00[CEU][hapmap]
rs9790393	0.95[EUR][1000 genomes]
rs9995388	0.97[EUR][1000 genomes]
rs9995612	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9997018	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv4547	chr4:151486280-151531479	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151470400-151503600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr4:151472000-151490000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:151472000-151501400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:151472600-151500200	Weak transcription	Aorta	Aorta
5	chr4:151473400-151491200	Weak transcription	Ovary	ovary
6	chr4:151474200-151489600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr4:151477200-151502400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:151478800-151489600	Weak transcription	A549	lung
9	chr4:151479400-151490200	Weak transcription	K562	blood
10	chr4:151479400-151500800	Weak transcription	Lung	lung
11	chr4:151479600-151501800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:151480600-151500800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:151481200-151500400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:151482000-151491000	Weak transcription	Fetal Thymus	thymus
15	chr4:151482800-151488200	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:151486200-151490200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:151486200-151490600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:151486400-151487200	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr4:151486400-151487400	Strong transcription	Fetal Intestine Large	intestine
20	chr4:151486600-151488000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:151486600-151488000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:151486600-151488800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:151486600-151489200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:151486600-151489600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:151486600-151490000	Weak transcription	Primary T cells from cord blood	blood
26	chr4:151486600-151490600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:151486600-151493800	Weak transcription	Pancreas	Pancrea
28	chr4:151486600-151494000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:151486600-151494000	Weak transcription	Left Ventricle	heart
30	chr4:151486600-151499800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr4:151486600-151500000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:151486600-151500000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr4:151486600-151500200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:151486600-151500800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:151486600-151503200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr4:151486600-151510400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:151487000-151502400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:151487000-151503200	Weak transcription	Primary B cells from cord blood	blood

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