Variant report

Variant	rs1532822
Chromosome Location	chr4:151452558-151452559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151448342..151450881-chr4:151451779..151453554,2	MCF-7	breast:
2	chr4:151447669..151450323-chr4:151450912..151453180,2	K562	blood:
3	chr4:151450833..151453159-chr4:151453933..151457802,3	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10000491	0.87[EUR][1000 genomes]
rs10000655	0.87[EUR][1000 genomes]
rs10025007	0.90[EUR][1000 genomes]
rs10025414	0.92[EUR][1000 genomes]
rs10027598	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10029305	0.83[ASN][1000 genomes]
rs10155442	0.92[EUR][1000 genomes]
rs10857247	0.87[EUR][1000 genomes]
rs11099762	0.83[ASN][1000 genomes]
rs11099766	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099773	0.92[EUR][1000 genomes]
rs11099774	0.92[EUR][1000 genomes]
rs11931175	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108435	0.80[EUR][1000 genomes]
rs12331720	0.88[ASN][1000 genomes]
rs12499862	0.87[EUR][1000 genomes]
rs12508892	0.87[EUR][1000 genomes]
rs12512600	0.83[ASN][1000 genomes]
rs12642528	0.80[EUR][1000 genomes]
rs12648307	0.83[ASN][1000 genomes]
rs13105658	0.83[ASN][1000 genomes]
rs13111441	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13144332	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504780	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1504781	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1504784	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1857751	0.81[AFR][1000 genomes]
rs1910720	0.83[ASN][1000 genomes]
rs1966052	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2001835	0.96[ASN][1000 genomes]
rs2134958	0.83[ASN][1000 genomes]
rs2134960	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2174366	0.83[ASN][1000 genomes]
rs2360070	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28451271	0.92[EUR][1000 genomes]
rs2884894	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4235250	0.92[EUR][1000 genomes]
rs4269161	0.90[EUR][1000 genomes]
rs4270570	0.92[EUR][1000 genomes]
rs4289432	0.90[EUR][1000 genomes]
rs4311291	0.92[EUR][1000 genomes]
rs4327465	0.84[EUR][1000 genomes]
rs4328896	0.87[EUR][1000 genomes]
rs4330340	0.87[EUR][1000 genomes]
rs4355367	0.90[EUR][1000 genomes]
rs4358377	0.87[EUR][1000 genomes]
rs4376124	0.92[EUR][1000 genomes]
rs4396971	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4396972	0.89[EUR][1000 genomes]
rs4401437	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4417951	0.90[EUR][1000 genomes]
rs4450905	0.92[EUR][1000 genomes]
rs4476581	0.90[EUR][1000 genomes]
rs4533751	0.90[EUR][1000 genomes]
rs4568218	0.80[EUR][1000 genomes]
rs4604037	0.87[EUR][1000 genomes]
rs4619872	0.92[EUR][1000 genomes]
rs4619873	0.92[EUR][1000 genomes]
rs4639047	0.83[ASN][1000 genomes]
rs4696186	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696214	0.82[EUR][1000 genomes]
rs4696537	0.92[EUR][1000 genomes]
rs4696629	0.87[EUR][1000 genomes]
rs62344739	0.81[AMR][1000 genomes]
rs6535736	0.83[ASN][1000 genomes]
rs68016242	0.87[EUR][1000 genomes]
rs6818709	0.87[EUR][1000 genomes]
rs6825990	0.84[EUR][1000 genomes]
rs6826248	0.87[EUR][1000 genomes]
rs6832193	0.83[ASN][1000 genomes]
rs6832498	0.80[EUR][1000 genomes]
rs6834928	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6839548	0.84[EUR][1000 genomes]
rs6841787	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6846154	0.92[EUR][1000 genomes]
rs6847725	0.87[EUR][1000 genomes]
rs6848343	0.83[ASN][1000 genomes]
rs6851587	0.87[EUR][1000 genomes]
rs6852493	0.89[EUR][1000 genomes]
rs6855667	0.87[EUR][1000 genomes]
rs6857952	0.83[ASN][1000 genomes]
rs6858267	0.89[EUR][1000 genomes]
rs7667511	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7670869	0.83[ASN][1000 genomes]
rs7671685	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7674861	0.81[AFR][1000 genomes]
rs7674989	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7676219	0.83[ASN][1000 genomes]
rs7678429	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7686220	0.84[EUR][1000 genomes]
rs7689850	0.82[EUR][1000 genomes]
rs7692615	0.82[EUR][1000 genomes]
rs7698007	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7698975	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs905767	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9790393	0.90[EUR][1000 genomes]
rs9995388	0.92[EUR][1000 genomes]
rs9995612	0.87[EUR][1000 genomes]
rs9997018	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151409000-151456600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:151422800-151474600	Weak transcription	Primary B cells from cord blood	blood
3	chr4:151435800-151452600	Weak transcription	Primary T cells from cord blood	blood
4	chr4:151440000-151454200	Weak transcription	HSMMtube	muscle
5	chr4:151440200-151472600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:151441200-151454800	Weak transcription	K562	blood
7	chr4:151445000-151472600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:151446400-151455800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:151450800-151455800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:151452000-151453200	Strong transcription	Primary hematopoietic stem cells	blood
11	chr4:151452200-151452600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:151452200-151453400	Enhancers	Brain Germinal Matrix	brain
13	chr4:151452400-151459200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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