Variant report

Variant	rs4580171
Chromosome Location	chr16:80039565-80039566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10514478	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11150238	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13330696	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34302186	0.84[AMR][1000 genomes]
rs4243198	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4243199	0.85[ASN][1000 genomes]
rs4426363	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4889064	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6564722	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6564724	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80028200-80040000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:80039400-80041800	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links