Variant report

Variant	rs4889064
Chromosome Location	chr16:80023074-80023075
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10514478	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34302186	0.92[AMR][1000 genomes]
rs4146391	0.85[AMR][1000 genomes]
rs4243198	0.88[EUR][1000 genomes]
rs4426363	0.90[EUR][1000 genomes]
rs4580171	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4606731	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6564722	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80021200-80023800	Enhancers	K562	blood
2	chr16:80022000-80023200	Enhancers	HSMMtube	muscle
3	chr16:80022000-80023600	Enhancers	Placenta	Placenta
4	chr16:80022200-80023800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr16:80022400-80023800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:80022600-80023400	Enhancers	NH-A	brain
7	chr16:80022600-80024000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr16:80022800-80024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:80022800-80024000	Enhancers	Fetal Lung	lung
10	chr16:80022800-80025200	Weak transcription	Fetal Intestine Small	intestine
11	chr16:80023000-80023600	Enhancers	Duodenum Mucosa	Duodenum
12	chr16:80023000-80023600	Enhancers	Fetal Intestine Large	intestine
13	chr16:80023000-80024000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr16:80023000-80024000	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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