Variant report

Variant	rs4580564
Chromosome Location	chr3:69293371-69293372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13322901	0.85[CEU][hapmap]
rs36012249	0.85[EUR][1000 genomes]
rs4343629	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4447768	0.82[ASN][1000 genomes]
rs4478079	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4855302	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789671	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7430534	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877010	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9881880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69253000-69297600	Weak transcription	Gastric	stomach
2	chr3:69254600-69299000	Weak transcription	Fetal Brain Male	brain
3	chr3:69269000-69301400	Weak transcription	HMEC	breast
4	chr3:69273800-69301400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:69281200-69303400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:69282000-69297400	Weak transcription	Brain Germinal Matrix	brain
7	chr3:69283600-69295800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:69286400-69299000	Weak transcription	Colonic Mucosa	Colon
9	chr3:69286400-69299000	Weak transcription	Left Ventricle	heart
10	chr3:69286600-69297600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:69286600-69298600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:69286600-69299000	Weak transcription	Adipose Nuclei	Adipose
13	chr3:69286800-69297400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:69286800-69297800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:69286800-69298600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr3:69286800-69298800	Weak transcription	Right Ventricle	heart
17	chr3:69286800-69299200	Weak transcription	Esophagus	oesophagus
18	chr3:69286800-69300800	Weak transcription	Placenta	Placenta
19	chr3:69287000-69298600	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:69287200-69299000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:69287200-69299200	Weak transcription	Lung	lung
22	chr3:69287600-69297600	Weak transcription	Brain Substantia Nigra	brain
23	chr3:69288000-69298200	Weak transcription	Fetal Brain Female	brain
24	chr3:69289600-69293600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr3:69289800-69293800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr3:69289800-69293800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr3:69289800-69293800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr3:69290000-69299600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:69290200-69293800	Enhancers	HUVEC	blood vessel
30	chr3:69290200-69294000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:69290400-69295800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:69290400-69297400	Weak transcription	Fetal Kidney	kidney
33	chr3:69290600-69296800	Weak transcription	Thymus	Thymus
34	chr3:69290800-69297400	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:69290800-69301600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:69291000-69293400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:69292000-69293600	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr3:69292000-69293600	Enhancers	Pancreas	Pancrea
39	chr3:69292200-69293400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:69292200-69293600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:69292400-69293400	Strong transcription	Dnd41	blood
42	chr3:69292400-69293600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:69292400-69293600	Enhancers	Brain Anterior Caudate	brain
44	chr3:69292400-69293800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:69292400-69293800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:69292400-69293800	Enhancers	H9 Cell Line	embryonic stem cell
47	chr3:69292400-69293800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr3:69292400-69294600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:69292400-69296000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:69292400-69298800	Weak transcription	Fetal Thymus	thymus

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