Variant report

Variant	rs4447768
Chromosome Location	chr3:69280903-69280904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69271768..69274528-chr3:69280335..69282349,2	MCF-7	breast:
2	chr3:69276059..69278771-chr3:69279459..69281519,2	MCF-7	breast:
3	chr3:69280351..69282504-chr3:69283108..69285019,2	MCF-7	breast:

rs_ID	r²[population]
rs10049245	1.00[MEX][hapmap]
rs10779991	1.00[MEX][hapmap]
rs1483896	1.00[MEX][hapmap]
rs4467461	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4513455	1.00[MEX][hapmap]
rs4580564	0.82[ASN][1000 genomes]
rs4645139	1.00[MEX][hapmap]
rs4855302	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4855370	1.00[MEX][hapmap]
rs6549191	1.00[MEX][hapmap]
rs73838314	0.92[EUR][1000 genomes]
rs9310145	1.00[MEX][hapmap]

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
2	chr3:69250000-69281600	Weak transcription	Esophagus	oesophagus
3	chr3:69250200-69286000	Weak transcription	Colonic Mucosa	Colon
4	chr3:69253000-69297600	Weak transcription	Gastric	stomach
5	chr3:69254000-69286000	Weak transcription	Right Ventricle	heart
6	chr3:69254600-69299000	Weak transcription	Fetal Brain Male	brain
7	chr3:69260000-69285800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:69262600-69286200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:69263800-69281000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:69266800-69281800	Weak transcription	Lung	lung
11	chr3:69269000-69286000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:69269000-69287600	Weak transcription	Spleen	Spleen
13	chr3:69269000-69301400	Weak transcription	HMEC	breast
14	chr3:69269800-69286000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:69270000-69285800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:69271000-69286000	Weak transcription	Adipose Nuclei	Adipose
17	chr3:69271200-69281000	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:69271200-69281400	Weak transcription	HSMMtube	muscle
19	chr3:69271200-69285600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:69271200-69285800	Weak transcription	Brain Anterior Caudate	brain
21	chr3:69271200-69286200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:69271600-69281000	Weak transcription	Thymus	Thymus
23	chr3:69271600-69287400	Weak transcription	Fetal Brain Female	brain
24	chr3:69271600-69289800	Weak transcription	Fetal Intestine Large	intestine
25	chr3:69271800-69281400	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:69273000-69281000	Weak transcription	Fetal Intestine Small	intestine
27	chr3:69273000-69281000	Weak transcription	Fetal Thymus	thymus
28	chr3:69273600-69290000	Weak transcription	HSMM	muscle
29	chr3:69273800-69281200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr3:69273800-69286000	Weak transcription	Fetal Lung	lung
31	chr3:69273800-69301400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:69274200-69281600	Weak transcription	Dnd41	blood
33	chr3:69274200-69285800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr3:69275600-69285000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:69276000-69281000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:69276000-69291800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr3:69276200-69281200	Weak transcription	Brain Substantia Nigra	brain
38	chr3:69276200-69281400	Weak transcription	Brain Angular Gyrus	brain
39	chr3:69277400-69285800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr3:69277800-69281400	Weak transcription	Liver	Liver
41	chr3:69278200-69281000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:69278400-69281000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:69279000-69283600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr3:69279400-69281000	Strong transcription	HUVEC	blood vessel
45	chr3:69279400-69284000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:69280000-69282000	Enhancers	Stomach Mucosa	stomach
47	chr3:69280000-69282600	Enhancers	Placenta	Placenta
48	chr3:69280000-69283000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:69280200-69281000	Weak transcription	Fetal Kidney	kidney
50	chr3:69280400-69282000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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