Variant report

Variant	rs1483896
Chromosome Location	chr3:69326354-69326355
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10049245	1.00[MEX][hapmap]
rs10779991	1.00[MEX][hapmap]
rs1976063	0.86[MKK][hapmap]
rs2019272	1.00[AMR][1000 genomes]
rs4447768	1.00[MEX][hapmap]
rs4513455	1.00[MEX][hapmap]
rs4615082	1.00[AMR][1000 genomes]
rs4645139	1.00[MEX][hapmap]
rs4855370	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6549191	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9310145	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1012483	chr3:69321191-69340525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69293000-69343400	Weak transcription	HSMM	muscle
2	chr3:69293400-69339200	Weak transcription	Aorta	Aorta
3	chr3:69298000-69329600	Weak transcription	Dnd41	blood
4	chr3:69299400-69331400	Weak transcription	HUVEC	blood vessel
5	chr3:69309200-69331200	Weak transcription	Fetal Lung	lung
6	chr3:69310000-69337600	Weak transcription	Placenta	Placenta
7	chr3:69310200-69337200	Weak transcription	Lung	lung
8	chr3:69311000-69329200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:69313400-69331000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:69314000-69331400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:69315400-69331400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:69317600-69332600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:69320800-69328800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:69320800-69331200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:69321000-69329400	Weak transcription	Brain Substantia Nigra	brain
16	chr3:69322400-69331000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:69323000-69339200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:69323200-69331400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:69323600-69331000	Weak transcription	Fetal Heart	heart
20	chr3:69325000-69331200	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:69325400-69326400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:69325400-69326800	Enhancers	NHEK	skin
23	chr3:69325600-69326400	Enhancers	HMEC	breast
24	chr3:69326000-69326400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:69326000-69326400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr3:69326000-69326400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:69326000-69326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:69326000-69326600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr3:69326000-69326600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:69326200-69326400	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr3:69326200-69326600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr3:69326200-69326800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:69326200-69327400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:69326200-69329000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:69326200-69337800	Weak transcription	Right Atrium	heart

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