Variant report

Variant	rs4615082
Chromosome Location	chr3:69332263-69332264
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10049245	0.80[AFR][1000 genomes]
rs10049350	0.80[AFR][1000 genomes]
rs1351791	0.82[AFR][1000 genomes]
rs1483896	1.00[AMR][1000 genomes]
rs2019272	1.00[AMR][1000 genomes]
rs4855370	1.00[AMR][1000 genomes]
rs6549191	1.00[AMR][1000 genomes]
rs9310145	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1012483	chr3:69321191-69340525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69293000-69343400	Weak transcription	HSMM	muscle
2	chr3:69293400-69339200	Weak transcription	Aorta	Aorta
3	chr3:69310000-69337600	Weak transcription	Placenta	Placenta
4	chr3:69310200-69337200	Weak transcription	Lung	lung
5	chr3:69317600-69332600	Weak transcription	Brain Anterior Caudate	brain
6	chr3:69323000-69339200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:69326200-69337800	Weak transcription	Right Atrium	heart
8	chr3:69326400-69332800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:69326400-69336400	Weak transcription	HMEC	breast
10	chr3:69327000-69332600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:69327400-69337200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:69327600-69343200	Weak transcription	Fetal Stomach	stomach
13	chr3:69328200-69337400	Weak transcription	Thymus	Thymus
14	chr3:69328600-69333000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:69328600-69339200	Weak transcription	Esophagus	oesophagus
16	chr3:69329000-69337400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:69329200-69332600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:69329400-69337400	Weak transcription	Spleen	Spleen
19	chr3:69329800-69332600	Weak transcription	NHEK	skin
20	chr3:69330400-69343200	Weak transcription	Fetal Thymus	thymus
21	chr3:69330600-69332400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr3:69331000-69333600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr3:69331200-69333000	Enhancers	Stomach Mucosa	stomach
24	chr3:69331400-69334000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr3:69331400-69337400	Weak transcription	Fetal Brain Female	brain
26	chr3:69331400-69342200	Weak transcription	HSMMtube	muscle
27	chr3:69331600-69332600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:69331600-69332600	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:69331600-69332800	Weak transcription	HUVEC	blood vessel
30	chr3:69331600-69336800	Weak transcription	GM12878-XiMat	blood
31	chr3:69331600-69339400	Weak transcription	Left Ventricle	heart
32	chr3:69331600-69355400	Weak transcription	Adipose Nuclei	Adipose
33	chr3:69331800-69332600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:69331800-69332600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:69331800-69332600	Weak transcription	Brain Substantia Nigra	brain
36	chr3:69331800-69332800	Weak transcription	Brain Angular Gyrus	brain
37	chr3:69331800-69334600	Weak transcription	Dnd41	blood
38	chr3:69331800-69334800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr3:69331800-69335400	Weak transcription	Fetal Lung	lung
40	chr3:69331800-69335600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:69331800-69338200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:69332000-69332400	Weak transcription	Fetal Heart	heart
43	chr3:69332000-69332800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:69332000-69337200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr3:69332200-69333400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links