Variant report

Variant	rs4855370
Chromosome Location	chr3:69318503-69318504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10049245	1.00[MEX][hapmap];0.82[MKK][hapmap]
rs10779991	1.00[ASW][hapmap];1.00[MEX][hapmap];0.82[AFR][1000 genomes]
rs1483896	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1976063	0.90[ASW][hapmap]
rs2019272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4447768	1.00[MEX][hapmap]
rs4513455	1.00[MEX][hapmap]
rs4615082	1.00[AMR][1000 genomes]
rs4645139	1.00[MEX][hapmap]
rs6549191	1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[AMR][1000 genomes]
rs9310145	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69293000-69343400	Weak transcription	HSMM	muscle
2	chr3:69293400-69339200	Weak transcription	Aorta	Aorta
3	chr3:69298000-69329600	Weak transcription	Dnd41	blood
4	chr3:69299400-69331400	Weak transcription	HUVEC	blood vessel
5	chr3:69299600-69320600	Weak transcription	Brain Substantia Nigra	brain
6	chr3:69302600-69322800	Weak transcription	HMEC	breast
7	chr3:69302600-69322800	Weak transcription	NHEK	skin
8	chr3:69302800-69322800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:69306000-69320400	Weak transcription	Brain Angular Gyrus	brain
10	chr3:69306200-69320200	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:69309200-69331200	Weak transcription	Fetal Lung	lung
12	chr3:69310000-69321600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:69310000-69337600	Weak transcription	Placenta	Placenta
14	chr3:69310200-69322800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:69310200-69337200	Weak transcription	Lung	lung
16	chr3:69311000-69329200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:69313400-69331000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:69314000-69331400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:69315400-69331400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr3:69316800-69320800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:69317400-69319600	Strong transcription	Primary hematopoietic stem cells	blood
22	chr3:69317600-69321400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:69317600-69332600	Weak transcription	Brain Anterior Caudate	brain
24	chr3:69318200-69320200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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