Variant report

Variant	rs4581654
Chromosome Location	chr15:58813566-58813567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58811000..58814506-chr15:58833587..58836863,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM63B-2	chr15:58813510-58813845	ENSG00000249011
2	lnc-FAM63B-2	chr15:58813510-58813845	ENSG00000259476.1

Variant related genes	Relation type
ENSG00000166035	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10775167	0.90[JPT][hapmap];0.83[AFR][1000 genomes]
rs11071385	0.85[CEU][hapmap]
rs12324536	0.85[CEU][hapmap]
rs17190615	0.86[CEU][hapmap]
rs17190622	0.86[CEU][hapmap]
rs17269341	0.85[CEU][hapmap]
rs1968682	0.95[CEU][hapmap];0.94[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2899632	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58804000-58816200	Weak transcription	Liver	Liver
2	chr15:58807600-58815400	Enhancers	Fetal Thymus	thymus
3	chr15:58807800-58815800	Enhancers	Primary B cells from cord blood	blood
4	chr15:58807800-58820200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:58808400-58813600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:58808400-58816200	Weak transcription	HepG2	liver
7	chr15:58809600-58813600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:58809600-58813600	Weak transcription	Stomach Mucosa	stomach
9	chr15:58809600-58814800	Enhancers	Fetal Stomach	stomach
10	chr15:58809600-58817000	Enhancers	Brain Substantia Nigra	brain
11	chr15:58810000-58813600	Weak transcription	Brain Angular Gyrus	brain
12	chr15:58811000-58813600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr15:58811200-58815400	Enhancers	GM12878-XiMat	blood
14	chr15:58811600-58815800	Enhancers	Brain Hippocampus Middle	brain
15	chr15:58811800-58813600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:58811800-58815400	Enhancers	Spleen	Spleen
17	chr15:58811800-58815600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:58811800-58815800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr15:58812000-58814400	Enhancers	Brain Cingulate Gyrus	brain
20	chr15:58812000-58815800	Enhancers	Brain Anterior Caudate	brain
21	chr15:58812200-58814000	Enhancers	Thymus	Thymus
22	chr15:58812200-58814200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:58812200-58814600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:58812400-58813800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr15:58812400-58814600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr15:58812400-58814600	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:58812400-58814800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr15:58812400-58815800	Enhancers	Fetal Muscle Leg	muscle
29	chr15:58812400-58816000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr15:58812600-58813600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:58812600-58813600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:58812600-58814000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:58812600-58814200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr15:58812600-58814200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
35	chr15:58812600-58814200	Flanking Active TSS	K562	blood
36	chr15:58812600-58814600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:58812600-58815200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:58812600-58815400	Enhancers	Esophagus	oesophagus
39	chr15:58812600-58815400	Enhancers	Right Atrium	heart
40	chr15:58812600-58815400	Enhancers	Right Ventricle	heart
41	chr15:58812600-58815600	Enhancers	Adipose Nuclei	Adipose
42	chr15:58812600-58815800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:58812600-58816200	Enhancers	Left Ventricle	heart
44	chr15:58812600-58816400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:58812600-58816800	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr15:58812600-58818000	Enhancers	Placenta	Placenta
47	chr15:58812800-58818600	Weak transcription	Gastric	stomach
48	chr15:58813000-58813800	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr15:58813000-58814000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:58813000-58814200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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