Variant report

Variant	rs4582768
Chromosome Location	chr1:165678721-165678722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165677856..165680745-chr1:165681004..165683770,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MGST3-2	chr1:165678602-165679205	ENSG00000215838.3
2	lnc-MGST3-2	chr1:165678264-165678747	NONHSAT007333
3	lnc-MGST3-2	chr1:165678602-165679199	NR_036683

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10800136	0.99[ASN][1000 genomes]
rs10800139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10800147	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10800148	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10800150	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10918258	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10918265	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12021643	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[EUR][1000 genomes]
rs12021678	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12027066	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs12044709	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs12047474	0.91[ASN][1000 genomes]
rs12069379	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12143900	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753894	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs6656194	0.81[TSI][hapmap]
rs6699874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72698092	0.86[ASN][1000 genomes]
rs72698094	0.86[ASN][1000 genomes]
rs72698097	0.87[ASN][1000 genomes]
rs73016601	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7514969	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537774	0.87[ASN][1000 genomes]
rs7549418	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7549509	0.85[EUR][1000 genomes]
rs9725173	1.00[CEU][hapmap];0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4582768	ADCY10	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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