Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165666145..165668955-chr1:165675306..165678474,3	K562	blood:

Variant related genes	Relation type
ENSG00000215838	Chromatin interaction
ENSG00000143149	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10800136	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10800139	0.85[ASN][1000 genomes]
rs10800147	0.96[ASN][1000 genomes]
rs10800148	0.96[ASN][1000 genomes]
rs10800150	0.98[ASN][1000 genomes]
rs10918258	0.98[ASN][1000 genomes]
rs10918265	0.98[ASN][1000 genomes]
rs12021643	0.89[ASN][1000 genomes]
rs12021678	0.98[ASN][1000 genomes]
rs12027066	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12044709	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12047474	0.88[EUR][1000 genomes]
rs12069379	0.98[ASN][1000 genomes]
rs12143900	0.86[ASN][1000 genomes]
rs3753894	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4582768	0.86[ASN][1000 genomes]
rs6699874	0.86[ASN][1000 genomes]
rs72698094	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72698097	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73016601	0.95[ASN][1000 genomes]
rs7514969	0.86[ASN][1000 genomes]
rs7537774	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7549418	0.99[ASN][1000 genomes]
rs7549509	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165677200-165677400	Enhancers	HepG2	liver

Quick Search: