Variant report

Variant	rs4585544
Chromosome Location	chr6:36931549-36931550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36930815..36932327-chr6:37373552..37376539,2	K562	blood:
3	chr6:36929829..36933522-chr6:36953197..36956380,5	MCF-7	breast:
4	chr6:36928176..36930778-chr6:36931482..36933887,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000164530	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1023037	0.89[ASN][1000 genomes]
rs12191672	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17624546	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17624895	0.81[EUR][1000 genomes]
rs2177845	0.89[ASN][1000 genomes]
rs2293388	0.81[EUR][1000 genomes]
rs2293389	0.81[EUR][1000 genomes]
rs3778024	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3778026	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3798478	0.81[EUR][1000 genomes]
rs6901560	0.85[AMR][1000 genomes]
rs734905	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753634	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753635	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357232	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380628	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36927000-36931600	Weak transcription	Lung	lung
2	chr6:36927200-36931600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:36927200-36933400	Enhancers	Stomach Mucosa	stomach
4	chr6:36927800-36933200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:36928000-36933600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:36928200-36935200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:36928600-36935000	Weak transcription	HSMMtube	muscle
8	chr6:36928600-36935400	Weak transcription	Small Intestine	intestine
9	chr6:36928800-36934000	Weak transcription	HSMM	muscle
10	chr6:36928800-36935000	Weak transcription	HUVEC	blood vessel
11	chr6:36929000-36934200	Weak transcription	Osteobl	bone
12	chr6:36929000-36934400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:36929000-36934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:36929000-36935200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:36929000-36935400	Weak transcription	Ovary	ovary
16	chr6:36929000-36935400	Weak transcription	A549	lung
17	chr6:36929200-36931800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:36929200-36934600	Weak transcription	NH-A	brain
19	chr6:36929400-36934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:36929400-36935200	Weak transcription	K562	blood
21	chr6:36929600-36932000	Weak transcription	Colon Smooth Muscle	Colon
22	chr6:36929600-36932200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:36929600-36936800	Weak transcription	Hela-S3	cervix
24	chr6:36929800-36933200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:36930000-36933000	Enhancers	Primary B cells from cord blood	blood
26	chr6:36930400-36931800	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr6:36930400-36933000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:36930400-36933200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:36930600-36931600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:36930600-36931600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:36930600-36931600	Flanking Active TSS	Thymus	Thymus
32	chr6:36930600-36932000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:36930600-36932000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:36930600-36932200	Enhancers	GM12878-XiMat	blood
35	chr6:36930600-36932400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:36930600-36932400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:36930600-36933000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr6:36930600-36933000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:36930600-36933000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:36930600-36933000	Enhancers	Dnd41	blood
41	chr6:36930600-36933200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:36930600-36933200	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr6:36930600-36933200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:36930600-36933200	Enhancers	Fetal Heart	heart
45	chr6:36930800-36931600	Enhancers	Fetal Brain Male	brain
46	chr6:36930800-36931800	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr6:36930800-36932400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:36930800-36932600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:36930800-36933200	Enhancers	Primary hematopoietic stem cells	blood
50	chr6:36930800-36933200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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