Variant report

Variant	rs4587340
Chromosome Location	chr8:9486280-9486281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9485608..9489855-chr8:9491266..9494747,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57409491	0.87[AFR][1000 genomes]
rs59039524	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9461000-9486400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:9466400-9491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:9471000-9487000	Weak transcription	HepG2	liver
4	chr8:9473200-9489400	Weak transcription	HSMM	muscle
5	chr8:9473200-9490000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:9473200-9491000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:9473200-9491200	Weak transcription	HSMMtube	muscle
8	chr8:9473400-9490000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:9474200-9509000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:9475200-9494400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:9481000-9486400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr8:9481000-9510800	Weak transcription	Primary B cells from cord blood	blood
13	chr8:9481200-9487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr8:9481200-9508400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:9481400-9487600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:9481800-9501400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr8:9484000-9486400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr8:9484000-9486800	Enhancers	Brain Angular Gyrus	brain
19	chr8:9484200-9486600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr8:9484200-9487000	Enhancers	Brain Anterior Caudate	brain
21	chr8:9484400-9486800	Enhancers	Brain Cingulate Gyrus	brain
22	chr8:9484400-9487800	Enhancers	Brain Hippocampus Middle	brain
23	chr8:9484400-9489000	Enhancers	Brain Substantia Nigra	brain
24	chr8:9484600-9486400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr8:9484600-9488800	Weak transcription	NHDF-Ad	bronchial
26	chr8:9484600-9490000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:9484800-9488800	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:9484800-9504600	Weak transcription	Primary T cells from cord blood	blood
29	chr8:9485000-9486400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr8:9485000-9495000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr8:9485000-9502800	Weak transcription	Psoas Muscle	Psoas
32	chr8:9485200-9493800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr8:9485400-9487000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:9485400-9487800	Enhancers	Small Intestine	intestine
35	chr8:9485600-9498200	Weak transcription	Ovary	ovary
36	chr8:9485600-9510400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:9485600-9510400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:9485800-9490800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:9485800-9508000	Weak transcription	Fetal Brain Female	brain
40	chr8:9486000-9486400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr8:9486000-9486400	Enhancers	Primary hematopoietic stem cells	blood
42	chr8:9486000-9486400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr8:9486000-9486800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr8:9486000-9486800	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr8:9486000-9487200	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr8:9486000-9487800	Enhancers	Liver	Liver
47	chr8:9486000-9488000	Enhancers	Stomach Mucosa	stomach
48	chr8:9486200-9486400	Enhancers	Pancreas	Pancrea
49	chr8:9486200-9486400	Enhancers	Right Ventricle	heart
50	chr8:9486200-9486400	Enhancers	Skeletal Muscle Female	skeletal muscle

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