Variant report

Variant	rs4587965
Chromosome Location	chr16:81661461-81661462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81657183..81659703-chr16:81659830..81661925,2	MCF-7	breast:
2	chr16:81660207..81662777-chr16:81676813..81678494,2	K562	blood:
3	chr16:81624368..81626630-chr16:81660607..81662818,2	MCF-7	breast:
4	chr16:81650490..81652052-chr16:81659570..81661839,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17201098	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3924152	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4889355	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81633600-81665800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr16:81634600-81664000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr16:81642400-81663800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr16:81642600-81664000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr16:81642600-81664400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr16:81649400-81664000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr16:81650800-81666000	Weak transcription	Small Intestine	intestine
8	chr16:81651200-81665400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr16:81651400-81664200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr16:81651400-81664800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr16:81652000-81663800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:81652200-81663800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr16:81652400-81663800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:81652600-81664400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr16:81654400-81666000	Genic enhancers	A549	lung
16	chr16:81654600-81666000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr16:81655200-81663600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr16:81655800-81663800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:81655800-81665400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr16:81656000-81665600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr16:81656400-81663000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr16:81656400-81663800	Weak transcription	Fetal Brain Female	brain
23	chr16:81656400-81664000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr16:81656600-81661600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr16:81656600-81666000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr16:81657200-81661600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr16:81657400-81665200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr16:81657400-81665400	Weak transcription	Dnd41	blood
29	chr16:81657600-81664000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr16:81658200-81663000	Strong transcription	Primary T cells from cord blood	blood
31	chr16:81659200-81661800	Weak transcription	Thymus	Thymus
32	chr16:81659200-81664200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr16:81659200-81665200	Strong transcription	Fetal Intestine Small	intestine
34	chr16:81659200-81669600	Weak transcription	Primary B cells from cord blood	blood
35	chr16:81659400-81663600	Weak transcription	Fetal Thymus	thymus
36	chr16:81659400-81666200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr16:81659600-81662000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr16:81659800-81664000	Weak transcription	Brain Germinal Matrix	brain
39	chr16:81659800-81664000	Weak transcription	Placenta	Placenta
40	chr16:81659800-81664400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr16:81659800-81665000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr16:81659800-81666000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr16:81659800-81666200	Weak transcription	Colonic Mucosa	Colon
44	chr16:81659800-81666200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr16:81659800-81667000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr16:81659800-81668800	Weak transcription	Aorta	Aorta
47	chr16:81659800-81678400	Weak transcription	Right Atrium	heart
48	chr16:81660000-81661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr16:81660000-81663000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr16:81660000-81663400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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