Variant report

Variant	rs3924152
Chromosome Location	chr16:81659309-81659310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81657243..81659579-chr16:81686689..81688277,2	K562	blood:
2	chr16:81659235..81661022-chr16:81680563..81683432,2	K562	blood:
3	chr16:81656240..81661284-chr16:81661846..81668268,8	K562	blood:
4	chr16:81657183..81659703-chr16:81659830..81661925,2	MCF-7	breast:
5	chr16:81659072..81660983-chr16:81664633..81666303,2	MCF-7	breast:
6	chr16:81654109..81657143-chr16:81658099..81660481,3	MCF-7	breast:
7	chr16:81657533..81660095-chr16:81668723..81672229,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17197883	1.00[CHB][hapmap]
rs17201098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4587965	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4889355	1.00[CHB][hapmap];0.92[AMR][1000 genomes]
rs4889393	1.00[YRI][hapmap]
rs7205166	1.00[CHB][hapmap]
rs8051922	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81633600-81665800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr16:81634600-81664000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr16:81642400-81663800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr16:81642600-81664000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr16:81642600-81664400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr16:81646200-81660800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr16:81649000-81659400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:81649400-81664000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr16:81650400-81659800	Weak transcription	Fetal Kidney	kidney
10	chr16:81650800-81666000	Weak transcription	Small Intestine	intestine
11	chr16:81651200-81665400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr16:81651400-81664200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr16:81651400-81664800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr16:81652000-81663800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:81652200-81663800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:81652400-81663800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:81652600-81664400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr16:81652800-81660600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr16:81654000-81660800	Genic enhancers	NHEK	skin
20	chr16:81654400-81666000	Genic enhancers	A549	lung
21	chr16:81654600-81666000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr16:81655200-81663600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr16:81655800-81663800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr16:81655800-81665400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr16:81656000-81665600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr16:81656400-81663000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr16:81656400-81663800	Weak transcription	Fetal Brain Female	brain
28	chr16:81656400-81664000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr16:81656600-81659600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr16:81656600-81661600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr16:81656600-81666000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr16:81657000-81660600	Enhancers	Stomach Mucosa	stomach
33	chr16:81657200-81660600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr16:81657200-81660800	Enhancers	HUVEC	blood vessel
35	chr16:81657200-81661600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr16:81657400-81665200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr16:81657400-81665400	Weak transcription	Dnd41	blood
38	chr16:81657600-81664000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr16:81658000-81659400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr16:81658000-81660000	Enhancers	Liver	Liver
41	chr16:81658000-81660000	Enhancers	Brain Hippocampus Middle	brain
42	chr16:81658000-81660400	Enhancers	Esophagus	oesophagus
43	chr16:81658000-81660800	Enhancers	Primary hematopoietic stem cells	blood
44	chr16:81658200-81659400	Genic enhancers	Fetal Muscle Leg	muscle
45	chr16:81658200-81659800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr16:81658200-81659800	Enhancers	Brain Germinal Matrix	brain
47	chr16:81658200-81660200	Enhancers	Colon Smooth Muscle	Colon
48	chr16:81658200-81663000	Strong transcription	Primary T cells from cord blood	blood
49	chr16:81658400-81660000	Enhancers	Right Ventricle	heart
50	chr16:81658400-81660200	Enhancers	Cortex derived primary cultured neurospheres	brain

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