Variant report

Variant	rs7205166
Chromosome Location	chr16:81675733-81675734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr16:81675420-81675747	K562	blood:	n/a	n/a
2	MXI1	chr16:81674284-81675757	SK-N-SH	brain:	n/a	chr16:81675164-81675173 chr16:81675171-81675186 chr16:81675169-81675184
3	NR3C1	chr16:81675605-81676053	A549	lung:	n/a	chr16:81675750-81675776 chr16:81675916-81675929 chr16:81675750-81675776 chr16:81675750-81675776 chr16:81675750-81675776

No.	Distal block	Cell Line	Cell type
1	chr16:81675458..81677749-chr16:81680221..81682705,3	MCF-7	breast:
2	chr16:81666002..81667796-chr16:81674529..81677780,4	MCF-7	breast:
3	chr16:81675581..81677750-chr16:81679413..81682764,3	K562	blood:

Variant related genes	Relation type
CMIP	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17197883	1.00[CHB][hapmap]
rs17201098	1.00[CHB][hapmap];0.88[MEX][hapmap]
rs3924152	1.00[CHB][hapmap]
rs4889355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs8051922	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81659800-81678400	Weak transcription	Right Atrium	heart
2	chr16:81660000-81683800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr16:81660200-81685600	Weak transcription	GM12878-XiMat	blood
4	chr16:81667000-81678400	Weak transcription	Brain Anterior Caudate	brain
5	chr16:81667600-81682400	Weak transcription	Colonic Mucosa	Colon
6	chr16:81667800-81682600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr16:81668400-81677800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr16:81668400-81680600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr16:81668400-81684600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr16:81668800-81678400	Weak transcription	NH-A	brain
11	chr16:81668800-81685400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr16:81669000-81679000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr16:81669000-81682400	Weak transcription	Brain Substantia Nigra	brain
14	chr16:81669000-81685400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr16:81669200-81680800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr16:81669400-81678400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr16:81669600-81676600	Weak transcription	Fetal Kidney	kidney
18	chr16:81669800-81685200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr16:81670000-81677800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr16:81670200-81680800	Weak transcription	Hela-S3	cervix
21	chr16:81670400-81678600	Weak transcription	HSMMtube	muscle
22	chr16:81670600-81676600	Weak transcription	Liver	Liver
23	chr16:81670600-81678400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:81670600-81678400	Weak transcription	HSMM	muscle
25	chr16:81670600-81679400	Strong transcription	Fetal Intestine Small	intestine
26	chr16:81671200-81676600	Strong transcription	HepG2	liver
27	chr16:81672200-81678200	Weak transcription	Right Ventricle	heart
28	chr16:81672200-81681000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr16:81672400-81686000	Weak transcription	Small Intestine	intestine
30	chr16:81672800-81676600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr16:81672800-81678400	Weak transcription	Left Ventricle	heart
32	chr16:81673000-81678600	Weak transcription	Fetal Lung	lung
33	chr16:81673400-81676800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr16:81673400-81680800	Weak transcription	HUVEC	blood vessel
35	chr16:81673400-81683600	Weak transcription	Adipose Nuclei	Adipose
36	chr16:81673600-81680200	Weak transcription	K562	blood
37	chr16:81673600-81682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr16:81673800-81676600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr16:81674000-81676800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr16:81674000-81677000	Strong transcription	Dnd41	blood
41	chr16:81674200-81676600	Strong transcription	A549	lung
42	chr16:81674200-81676800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr16:81674200-81677000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr16:81674200-81678200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr16:81674400-81676800	Strong transcription	Primary T cells from cord blood	blood
46	chr16:81674400-81679400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr16:81674400-81681600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr16:81674600-81675800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr16:81674600-81675800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr16:81674600-81676000	Strong transcription	Fetal Intestine Large	intestine

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