Variant report

Variant	rs4588896
Chromosome Location	chr8:121642085-121642086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10095267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28582528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128596	0.84[AMR][1000 genomes]
rs4278188	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313196	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4324958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4490883	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4584179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4604483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7840986	0.86[AMR][1000 genomes]
rs7841516	0.94[EUR][1000 genomes]
rs7841738	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121588200-121642400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr8:121605800-121644400	Weak transcription	Gastric	stomach
3	chr8:121607600-121643000	Weak transcription	Fetal Intestine Large	intestine
4	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
5	chr8:121621800-121644400	Weak transcription	Spleen	Spleen
6	chr8:121623400-121647600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:121625000-121642200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr8:121625000-121643600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr8:121625600-121645400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:121629200-121643600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:121629400-121642600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr8:121629400-121645200	Weak transcription	Fetal Stomach	stomach
14	chr8:121633400-121645200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:121633600-121654000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:121635400-121643400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:121635400-121644600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:121635800-121643400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:121635800-121643800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:121637600-121644600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:121637800-121644800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:121638400-121642800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:121638400-121643400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:121638400-121652400	Weak transcription	NHDF-Ad	bronchial
25	chr8:121638400-121653600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:121639000-121645600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:121639200-121645000	Strong transcription	Liver	Liver
28	chr8:121639200-121645400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:121639400-121642200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:121639400-121649400	Weak transcription	Psoas Muscle	Psoas
31	chr8:121639800-121645600	Strong transcription	Primary T cells from cord blood	blood
32	chr8:121640000-121645400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:121640200-121642400	Weak transcription	NHLF	lung
34	chr8:121640400-121642200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr8:121640400-121642200	Weak transcription	Primary B cells from cord blood	blood
36	chr8:121640400-121642400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:121640400-121642600	Weak transcription	HSMMtube	muscle
38	chr8:121640400-121647000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:121640600-121643400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:121640600-121643600	Weak transcription	Osteobl	bone
41	chr8:121640600-121644000	Weak transcription	HSMM	muscle
42	chr8:121640600-121645000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr8:121640600-121645000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr8:121640600-121646000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr8:121640600-121646600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr8:121640600-121648000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:121640600-121654000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr8:121640800-121642400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:121641000-121645000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr8:121641000-121646600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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