Variant report

Variant	rs7840986
Chromosome Location	chr8:121645514-121645515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10095267	0.86[AMR][1000 genomes]
rs10097857	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10108624	0.86[AMR][1000 genomes]
rs10955984	1.00[CHB][hapmap]
rs11779540	0.82[CHB][hapmap]
rs11780390	1.00[CHB][hapmap]
rs28582528	0.86[AMR][1000 genomes]
rs4128596	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4278188	0.86[AMR][1000 genomes]
rs4313196	0.82[AMR][1000 genomes]
rs4324958	0.86[AMR][1000 genomes]
rs4364672	0.86[AMR][1000 genomes]
rs4584179	0.86[AMR][1000 genomes]
rs4588896	0.86[AMR][1000 genomes]
rs4871081	0.86[AMR][1000 genomes]
rs7838111	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7841738	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
2	chr8:121623400-121647600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:121633600-121654000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:121638400-121652400	Weak transcription	NHDF-Ad	bronchial
6	chr8:121638400-121653600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:121639000-121645600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:121639400-121649400	Weak transcription	Psoas Muscle	Psoas
9	chr8:121639800-121645600	Strong transcription	Primary T cells from cord blood	blood
10	chr8:121640400-121647000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:121640600-121646000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr8:121640600-121646600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:121640600-121648000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:121640600-121654000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:121641000-121646600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:121641400-121647000	Weak transcription	Aorta	Aorta
17	chr8:121642000-121645600	Strong transcription	HepG2	liver
18	chr8:121642200-121645800	Strong transcription	Primary hematopoietic stem cells	blood
19	chr8:121643600-121646200	Weak transcription	Colonic Mucosa	Colon
20	chr8:121644200-121666800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:121644600-121646200	Weak transcription	Fetal Intestine Large	intestine
22	chr8:121644600-121646600	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:121644600-121647600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr8:121644800-121645800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:121644800-121646400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr8:121644800-121664400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:121644800-121664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:121644800-121674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:121645000-121646600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:121645000-121646600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr8:121645000-121646600	Weak transcription	Osteobl	bone
32	chr8:121645000-121648000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:121645000-121649200	Weak transcription	Liver	Liver
34	chr8:121645000-121651200	Weak transcription	Lung	lung
35	chr8:121645000-121653600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:121645000-121654600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:121645000-121655200	Weak transcription	HSMM	muscle
38	chr8:121645000-121655200	Weak transcription	HSMMtube	muscle
39	chr8:121645000-121664400	Weak transcription	NHLF	lung
40	chr8:121645000-121666400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:121645000-121673000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr8:121645200-121646800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr8:121645200-121647000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:121645200-121647000	Weak transcription	Spleen	Spleen
45	chr8:121645200-121649200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:121645200-121649600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr8:121645200-121655000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr8:121645200-121655400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr8:121645200-121665200	Weak transcription	Primary B cells from cord blood	blood
50	chr8:121645400-121653200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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