Variant report
| Variant | rs4592241 |
|---|---|
| Chromosome Location | chr1:86798758-86798759 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12047843 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12725661 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12741127 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1334141 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17099731 | 1.00[EUR][1000 genomes] |
| rs2225669 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34101562 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34770429 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs34851039 | 0.81[AFR][1000 genomes] |
| rs35097112 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35340918 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35462810 | 0.94[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35846067 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs36036063 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs384122 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs418289 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs433577 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs569119 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs71662160 | 0.81[AFR][1000 genomes] |
| rs71662161 | 0.81[AFR][1000 genomes] |
| rs9433456 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv546722 | chr1:86278315-86891073 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003838 | chr1:86591841-87212231 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1002541 | chr1:86689088-86905902 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv871866 | chr1:86726619-86851420 | Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:86791400-86804600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
