Variant report

Variant	rs36036063
Chromosome Location	chr1:86801312-86801313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12047843	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12724057	0.82[AFR][1000 genomes]
rs12725661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12733468	0.82[AFR][1000 genomes]
rs12741127	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12749637	0.82[AFR][1000 genomes]
rs12758659	0.82[AFR][1000 genomes]
rs1334139	0.82[AFR][1000 genomes]
rs1334141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17099731	1.00[EUR][1000 genomes]
rs2225669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34101562	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34204564	0.82[AFR][1000 genomes]
rs34495136	0.82[AFR][1000 genomes]
rs34513089	0.82[AFR][1000 genomes]
rs34536842	0.82[AFR][1000 genomes]
rs34770429	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34851039	0.83[AFR][1000 genomes]
rs35097112	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35261823	0.82[AFR][1000 genomes]
rs35303211	0.82[AFR][1000 genomes]
rs35340918	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35408727	0.82[AFR][1000 genomes]
rs35462810	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35846067	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35908397	0.82[AFR][1000 genomes]
rs35950578	0.82[AFR][1000 genomes]
rs384122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs418289	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs433577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4592241	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs569119	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71662157	0.82[AFR][1000 genomes]
rs71662160	0.83[AFR][1000 genomes]
rs71662161	0.83[AFR][1000 genomes]
rs932692	0.82[AFR][1000 genomes]
rs9433456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871866	chr1:86726619-86851420	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86791400-86804600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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