Variant report

Variant	rs35303211
Chromosome Location	chr1:86846547-86846548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:86845700..86846558-chr1:86939625..86940177,2	MCF-7	breast:
2	chr1:86834879..86837302-chr1:86845447..86847463,2	K562	blood:
3	chr1:86845633..86846612-chr1:86965720..86966238,3	K562	blood:
4	chr1:86846140..86846692-chr1:86967603..86968149,2	MCF-7	breast:
5	chr1:86845689..86846553-chr1:86965309..86966983,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122417	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12724057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12733468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12749637	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12757699	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12758659	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1334139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17129145	1.00[AMR][1000 genomes]
rs17129150	0.82[AMR][1000 genomes]
rs17129169	0.95[AMR][1000 genomes]
rs17129194	0.84[AMR][1000 genomes]
rs34204564	1.00[AFR][1000 genomes]
rs34495136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34513089	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34536842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34834083	0.83[AMR][1000 genomes]
rs34851039	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35261823	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35408727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35604082	0.80[AMR][1000 genomes]
rs35908397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35950578	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36036063	0.82[AFR][1000 genomes]
rs55917045	1.00[AMR][1000 genomes]
rs71662157	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs71662158	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs71662160	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71662161	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs932692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871866	chr1:86726619-86851420	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv871081	chr1:86806372-86892819	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv1793594	chr1:86833653-86858957	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86815200-86860200	Weak transcription	Fetal Brain Male	brain
2	chr1:86818000-86851600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:86820200-86854400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr1:86820200-86854800	Weak transcription	HSMMtube	muscle
5	chr1:86820400-86847000	Weak transcription	Liver	Liver
6	chr1:86820400-86848000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:86820400-86860200	Weak transcription	NHEK	skin
8	chr1:86820600-86848000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:86824000-86848200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:86836600-86860800	Weak transcription	Aorta	Aorta
11	chr1:86839800-86846800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:86839800-86848200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:86840600-86848200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:86840600-86859600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:86840800-86848600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:86841000-86849000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr1:86841000-86849400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:86841000-86851400	Weak transcription	HMEC	breast
19	chr1:86841000-86854400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:86841000-86859800	Weak transcription	HSMM	muscle
21	chr1:86841600-86859800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:86841800-86855000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:86842200-86847000	Weak transcription	HUVEC	blood vessel
24	chr1:86842400-86848200	Weak transcription	Colon Smooth Muscle	Colon
25	chr1:86843400-86847000	Weak transcription	Adipose Nuclei	Adipose
26	chr1:86843400-86847000	Weak transcription	Brain Angular Gyrus	brain
27	chr1:86843400-86847000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr1:86843400-86848000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:86843400-86855000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:86843400-86860800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:86843600-86847000	Weak transcription	Fetal Stomach	stomach
32	chr1:86843600-86858600	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:86843600-86859200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:86843600-86860600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:86843600-86860800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:86843800-86849000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:86843800-86854000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr1:86844200-86848000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr1:86844400-86848000	Weak transcription	Primary B cells from cord blood	blood
40	chr1:86844400-86849200	Weak transcription	Left Ventricle	heart
41	chr1:86844600-86853400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr1:86844800-86846600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr1:86844800-86846600	Weak transcription	Fetal Muscle Leg	muscle
44	chr1:86844800-86855000	Weak transcription	Thymus	Thymus
45	chr1:86844800-86859200	Weak transcription	Brain Germinal Matrix	brain
46	chr1:86844800-86861000	Weak transcription	Fetal Intestine Small	intestine
47	chr1:86845000-86847000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:86845000-86848000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr1:86845000-86850800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr1:86845000-86853800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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