The 2.0 version of rSNPBase

Variant report

Variant rs34204564
Chromosome Location chr1:86823854-86823855
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86808600-86842800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:86813800-86836400 Weak transcription Lung lung
3 chr1:86813800-86842600 Weak transcription Fetal Heart heart
4 chr1:86815200-86860200 Weak transcription Fetal Brain Male brain
5 chr1:86816000-86842400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:86816200-86824200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
7 chr1:86816200-86826200 Weak transcription A549 lung
8 chr1:86817200-86843800 Weak transcription Small Intestine intestine
9 chr1:86817400-86824400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr1:86817400-86824400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:86817400-86826000 Strong transcription Primary T regulatory cells fromperipheralblood blood
12 chr1:86817400-86826000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:86817400-86826200 Strong transcription HUVEC blood vessel
14 chr1:86817600-86825200 Strong transcription Primary T cells fromperipheralblood blood
15 chr1:86817600-86825400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
16 chr1:86817600-86826000 Strong transcription Primary T helper cells PMA-I stimulated --
17 chr1:86817600-86826200 Strong transcription Primary T helper cells fromperipheralblood blood
18 chr1:86817600-86843000 Weak transcription Brain Cingulate Gyrus brain
19 chr1:86817800-86828000 Weak transcription Fetal Stomach stomach
20 chr1:86817800-86828000 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:86817800-86835400 Weak transcription Esophagus oesophagus
22 chr1:86817800-86840000 Weak transcription GM12878-XiMat blood
23 chr1:86817800-86842400 Weak transcription Rectal Smooth Muscle rectum
24 chr1:86818000-86842600 Weak transcription Fetal Intestine Small intestine
25 chr1:86818000-86843200 Weak transcription Pancreas Pancrea
26 chr1:86818000-86851600 Weak transcription Placenta Amnion Placenta Amnion
27 chr1:86818200-86841000 Weak transcription Fetal Kidney kidney
28 chr1:86818400-86824000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr1:86819000-86824000 Strong transcription Fetal Intestine Large intestine
30 chr1:86819000-86838400 Weak transcription NHDF-Ad bronchial
31 chr1:86819800-86824000 Weak transcription Right Ventricle heart
32 chr1:86819800-86828000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr1:86819800-86830200 Weak transcription Spleen Spleen
34 chr1:86819800-86839400 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr1:86819800-86839400 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr1:86819800-86840200 Weak transcription Brain Angular Gyrus brain
37 chr1:86819800-86840200 Weak transcription HMEC breast
38 chr1:86819800-86842200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:86819800-86842600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr1:86819800-86843000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr1:86819800-86843000 Weak transcription Fetal Muscle Trunk muscle
42 chr1:86820200-86824000 Weak transcription H1 Cell Line embryonic stem cell
43 chr1:86820200-86826800 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr1:86820200-86840200 Weak transcription Brain Anterior Caudate brain
45 chr1:86820200-86841200 Weak transcription Brain Inferior Temporal Lobe brain
46 chr1:86820200-86842600 Weak transcription Brain Germinal Matrix brain
47 chr1:86820200-86843400 Weak transcription Left Ventricle heart
48 chr1:86820200-86854400 Weak transcription Primary T killer naive cells fromperipheralblood blood
49 chr1:86820200-86854800 Weak transcription HSMMtube muscle
50 chr1:86820400-86824800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015