The 2.0 version of rSNPBase

Variant report

Variant rs28788025
Chromosome Location chr1:86856562-86856563
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86815200-86860200 Weak transcription Fetal Brain Male brain
2 chr1:86820400-86860200 Weak transcription NHEK skin
3 chr1:86836600-86860800 Weak transcription Aorta Aorta
4 chr1:86840600-86859600 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:86841000-86859800 Weak transcription HSMM muscle
6 chr1:86841600-86859800 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:86843400-86860800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:86843600-86858600 Weak transcription Brain Hippocampus Middle brain
9 chr1:86843600-86859200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr1:86843600-86860600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:86843600-86860800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:86844800-86859200 Weak transcription Brain Germinal Matrix brain
13 chr1:86844800-86861000 Weak transcription Fetal Intestine Small intestine
14 chr1:86845000-86859200 Weak transcription NH-A brain
15 chr1:86845000-86859400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:86845000-86860200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr1:86845000-86860600 Weak transcription Fetal Thymus thymus
18 chr1:86845000-86860800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr1:86845200-86859400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:86846600-86860400 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr1:86848800-86861000 Weak transcription Primary B cells from cord blood blood
22 chr1:86849000-86858600 Weak transcription NHDF-Ad bronchial
23 chr1:86849200-86860200 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr1:86849200-86860800 Weak transcription Primary hematopoietic stem cells blood
25 chr1:86851800-86859800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:86852400-86860600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:86853400-86857200 Enhancers Primary T helper naive cells fromperipheralblood blood
28 chr1:86853800-86857400 Enhancers Primary T helper cells fromperipheralblood blood
29 chr1:86854800-86857000 Enhancers Dnd41 blood
30 chr1:86855200-86856800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr1:86855200-86859200 Weak transcription Osteobl bone
32 chr1:86855600-86857200 Enhancers Primary T cells from cord blood blood
33 chr1:86855600-86857200 Enhancers Primary T helper naive cells from peripheral blood blood
34 chr1:86855600-86857200 Enhancers Primary T regulatory cells fromperipheralblood blood
35 chr1:86855600-86857600 Enhancers Primary T helper cells PMA-I stimulated --
36 chr1:86855600-86858600 Weak transcription HUVEC blood vessel
37 chr1:86855600-86858800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:86855600-86858800 Weak transcription Adipose Nuclei Adipose
39 chr1:86855600-86858800 Weak transcription GM12878-XiMat blood
40 chr1:86855600-86859000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:86855600-86859600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr1:86855600-86860200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr1:86855600-86860800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
44 chr1:86855600-86860800 Weak transcription Brain Cingulate Gyrus brain
45 chr1:86855800-86857200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
46 chr1:86855800-86857200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr1:86855800-86858200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:86855800-86858600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr1:86855800-86858600 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr1:86855800-86858800 Weak transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015