The 2.0 version of rSNPBase

Variant report

Variant rs12029568
Chromosome Location chr1:86845599-86845600
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86815200-86860200 Weak transcription Fetal Brain Male brain
2 chr1:86818000-86851600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:86820200-86854400 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr1:86820200-86854800 Weak transcription HSMMtube muscle
5 chr1:86820400-86846200 Weak transcription NHLF lung
6 chr1:86820400-86846400 Weak transcription Muscle Satellite Cultured Cells --
7 chr1:86820400-86847000 Weak transcription Liver Liver
8 chr1:86820400-86848000 Weak transcription Stomach Smooth Muscle stomach
9 chr1:86820400-86860200 Weak transcription NHEK skin
10 chr1:86820600-86848000 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr1:86822400-86846200 Weak transcription Gastric stomach
12 chr1:86824000-86848200 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr1:86836600-86860800 Weak transcription Aorta Aorta
14 chr1:86838200-86845800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr1:86839800-86846800 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:86839800-86848200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr1:86840600-86848200 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr1:86840600-86859600 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr1:86840800-86848600 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:86841000-86849000 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr1:86841000-86849400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:86841000-86851400 Weak transcription HMEC breast
23 chr1:86841000-86854400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:86841000-86859800 Weak transcription HSMM muscle
25 chr1:86841600-86845800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr1:86841600-86859800 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr1:86841800-86855000 Weak transcription Primary T cells fromperipheralblood blood
28 chr1:86842000-86846200 Weak transcription NHDF-Ad bronchial
29 chr1:86842200-86847000 Weak transcription HUVEC blood vessel
30 chr1:86842400-86848200 Weak transcription Colon Smooth Muscle Colon
31 chr1:86843400-86847000 Weak transcription Adipose Nuclei Adipose
32 chr1:86843400-86847000 Weak transcription Brain Angular Gyrus brain
33 chr1:86843400-86847000 Weak transcription Rectal Smooth Muscle rectum
34 chr1:86843400-86848000 Weak transcription Primary T helper cells fromperipheralblood blood
35 chr1:86843400-86855000 Weak transcription Brain Cingulate Gyrus brain
36 chr1:86843400-86860800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
37 chr1:86843600-86845600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
38 chr1:86843600-86845800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:86843600-86846000 Weak transcription Fetal Brain Female brain
40 chr1:86843600-86846200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:86843600-86847000 Weak transcription Fetal Stomach stomach
42 chr1:86843600-86858600 Weak transcription Brain Hippocampus Middle brain
43 chr1:86843600-86859200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:86843600-86860600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:86843600-86860800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:86843800-86845600 Weak transcription Fetal Intestine Large intestine
47 chr1:86843800-86849000 Weak transcription Duodenum Mucosa Duodenum
48 chr1:86843800-86854000 Weak transcription Primary T regulatory cells fromperipheralblood blood
49 chr1:86844000-86845600 Weak transcription Fetal Muscle Trunk muscle
50 chr1:86844000-86846200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015