Variant report
| Variant | rs12038144 |
|---|---|
| Chromosome Location | chr1:86799023-86799024 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11161808 | 0.83[AMR][1000 genomes] |
| rs12022446 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12023726 | 0.83[AMR][1000 genomes] |
| rs12023799 | 0.83[AMR][1000 genomes] |
| rs12029568 | 0.83[AMR][1000 genomes] |
| rs12030666 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12032435 | 0.83[AMR][1000 genomes] |
| rs12034967 | 0.83[AMR][1000 genomes] |
| rs12037028 | 0.83[AMR][1000 genomes] |
| rs12037391 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12038844 | 0.83[AMR][1000 genomes] |
| rs12039899 | 0.83[AMR][1000 genomes] |
| rs12043873 | 0.83[AMR][1000 genomes] |
| rs12044970 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12045012 | 0.83[AMR][1000 genomes] |
| rs12045465 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12046199 | 0.83[AMR][1000 genomes] |
| rs12046894 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12047304 | 0.83[AMR][1000 genomes] |
| rs12047305 | 0.83[AMR][1000 genomes] |
| rs12047843 | 1.00[ASN][1000 genomes] |
| rs12047913 | 0.83[AMR][1000 genomes] |
| rs12048082 | 0.83[AMR][1000 genomes] |
| rs12048329 | 0.83[AMR][1000 genomes] |
| rs17363465 | 1.00[AFR][1000 genomes] |
| rs2274999 | 0.83[AMR][1000 genomes] |
| rs28688345 | 0.83[AMR][1000 genomes] |
| rs3737671 | 0.83[AMR][1000 genomes] |
| rs3765509 | 0.83[AMR][1000 genomes] |
| rs4497186 | 0.83[AMR][1000 genomes] |
| rs59775624 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv546722 | chr1:86278315-86891073 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003838 | chr1:86591841-87212231 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1002541 | chr1:86689088-86905902 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv871866 | chr1:86726619-86851420 | Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:86791400-86804600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
