Variant report

Variant	rs4593093
Chromosome Location	chr4:92261676-92261677
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1406316	0.83[CEU][hapmap]
rs1528564	0.83[CEU][hapmap]
rs1528572	0.82[AMR][1000 genomes]
rs1528573	0.82[AMR][1000 genomes]
rs1528574	0.92[EUR][1000 genomes]
rs1528575	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs1528576	0.82[AMR][1000 genomes]
rs1528577	0.82[AMR][1000 genomes]
rs1528578	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs1534556	0.83[CEU][hapmap]
rs1609321	0.82[AMR][1000 genomes]
rs1609322	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs1609323	0.82[AMR][1000 genomes]
rs1881454	1.00[CEU][hapmap]
rs1919226	0.82[AMR][1000 genomes]
rs1919227	0.84[CEU][hapmap]
rs2178222	0.82[AMR][1000 genomes]
rs3762827	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs4524348	0.82[AMR][1000 genomes]
rs6532289	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs6532290	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6532291	0.89[CEU][hapmap]
rs6532292	0.81[CEU][hapmap]
rs6532293	0.83[CEU][hapmap]
rs6532299	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6816636	0.83[AMR][1000 genomes]
rs6816883	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6817404	0.82[AMR][1000 genomes]
rs6833290	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs6834615	0.82[AMR][1000 genomes]
rs6841781	1.00[CEU][hapmap]
rs7340864	0.82[AMR][1000 genomes]
rs7653977	0.83[CEU][hapmap]
rs7659326	0.83[AMR][1000 genomes]
rs7683541	1.00[CEU][hapmap]
rs7696314	0.83[AMR][1000 genomes]
rs955500	1.00[CEU][hapmap]
rs9999729	0.84[CEU][hapmap]
rs9999885	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3448147	chr4:92011533-92275731	Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3384271	chr4:92073391-92464275	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879566	chr4:92215966-92322333	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879567	chr4:92215966-92413671	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv522208	chr4:92241587-92283771	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1830673	chr4:92241587-92379081	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv879568	chr4:92244300-92429961	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv529020	chr4:92253926-92293482	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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