Variant report

Variant	rs4597805
Chromosome Location	chr4:47064496-47064497
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10015366	1.00[ASW][hapmap];0.88[MKK][hapmap];0.82[TSI][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs12507012	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4315750	1.00[CEU][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4317179	0.87[ASW][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap];0.88[ASN][1000 genomes]
rs4374601	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6829206	0.86[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6837255	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6846701	1.00[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs993776	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054000-47067000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:47054400-47066800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:47054600-47066800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:47063800-47071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:47064200-47065000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:47064200-47065000	Weak transcription	Osteobl	bone
8	chr4:47064200-47066800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:47064200-47073000	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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