Variant report
| Variant | rs4598886 |
|---|---|
| Chromosome Location | chr15:92187978-92187979 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:92187612..92190223-chr15:92192012..92193811,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-VPS33B-1 | chr15:92187968-92188108 | ENSG00000258765 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258765 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs12438407 | 0.80[ASN][1000 genomes] |
| rs12438437 | 1.00[ASN][1000 genomes] |
| rs12441218 | 1.00[ASN][1000 genomes] |
| rs12441238 | 1.00[ASN][1000 genomes] |
| rs28567823 | 1.00[ASN][1000 genomes] |
| rs60634761 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62011452 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048635 | chr15:92073294-92557339 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047081 | chr15:92151161-92191339 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
