Variant report

Variant	rs28567823
Chromosome Location	chr15:92189261-92189262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12438407	0.80[ASN][1000 genomes]
rs12438437	1.00[ASN][1000 genomes]
rs12441218	1.00[ASN][1000 genomes]
rs12441238	1.00[ASN][1000 genomes]
rs28426377	0.85[EUR][1000 genomes]
rs4598886	1.00[ASN][1000 genomes]
rs56717410	0.85[EUR][1000 genomes]
rs57078344	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66712469	0.85[EUR][1000 genomes]
rs7180485	0.85[EUR][1000 genomes]
rs7181244	0.85[EUR][1000 genomes]
rs72759992	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1047081	chr15:92151161-92191339	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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