Variant report

Variant	rs66712469
Chromosome Location	chr15:92170855-92170856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92168046..92170940-chr15:92173867..92175722,4	MCF-7	breast:
2	chr15:92162736..92166169-chr15:92167377..92170941,3	MCF-7	breast:
3	chr15:92170639..92173345-chr15:92176759..92179655,2	K562	blood:
4	chr15:92164034..92165548-chr15:92170234..92172069,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28426377	1.00[EUR][1000 genomes]
rs28567823	0.85[EUR][1000 genomes]
rs56717410	1.00[EUR][1000 genomes]
rs57078344	0.85[EUR][1000 genomes]
rs7180485	1.00[EUR][1000 genomes]
rs7181244	1.00[EUR][1000 genomes]
rs72759992	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1041524	chr15:92135348-92181419	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1047081	chr15:92151161-92191339	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92166200-92171000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:92166400-92171000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:92168800-92172000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:92168800-92172200	Enhancers	Fetal Lung	lung
5	chr15:92169000-92171600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:92169200-92171400	Enhancers	Liver	Liver
7	chr15:92169400-92171000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:92169400-92172800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:92169600-92171200	Enhancers	Pancreas	Pancrea
10	chr15:92169600-92172000	Enhancers	Fetal Stomach	stomach
11	chr15:92169800-92171400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:92170000-92171400	Enhancers	Right Ventricle	heart
13	chr15:92170000-92172000	Enhancers	Rectal Smooth Muscle	rectum
14	chr15:92170000-92172000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr15:92170000-92172200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:92170000-92172200	Enhancers	Colon Smooth Muscle	Colon
17	chr15:92170200-92171200	Enhancers	Stomach Smooth Muscle	stomach
18	chr15:92170200-92171800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr15:92170200-92172000	Enhancers	Fetal Heart	heart
20	chr15:92170200-92172200	Enhancers	Left Ventricle	heart
21	chr15:92170400-92171600	Enhancers	Brain Anterior Caudate	brain
22	chr15:92170400-92171600	Enhancers	Fetal Muscle Leg	muscle
23	chr15:92170400-92171800	Enhancers	Fetal Brain Male	brain
24	chr15:92170400-92171800	Enhancers	Fetal Brain Female	brain
25	chr15:92170400-92172000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:92170400-92172000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:92170600-92171000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:92170600-92171000	Enhancers	Psoas Muscle	Psoas
29	chr15:92170600-92171400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr15:92170600-92171600	Enhancers	Ovary	ovary
31	chr15:92170600-92171800	Enhancers	Brain Germinal Matrix	brain
32	chr15:92170600-92171800	Enhancers	Brain Hippocampus Middle	brain
33	chr15:92170800-92171000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr15:92170800-92171600	Enhancers	Fetal Muscle Trunk	muscle
35	chr15:92170800-92171800	Enhancers	Brain Substantia Nigra	brain

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