Variant report

Variant	rs4599613
Chromosome Location	chr6:166719350-166719351
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1108821	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1108822	1.00[ASN][1000 genomes]
rs4075451	1.00[ASN][1000 genomes]
rs4263564	1.00[ASN][1000 genomes]
rs6913353	1.00[MEX][hapmap]
rs7753337	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7757224	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886936	chr6:166714024-166731289	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166715600-166719400	Enhancers	Brain Hippocampus Middle	brain
2	chr6:166717000-166720200	Weak transcription	Pancreas	Pancrea
3	chr6:166718800-166722600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:166719000-166719400	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
5	chr6:166719000-166719400	Enhancers	Brain Germinal Matrix	brain
6	chr6:166719000-166719400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
7	chr6:166719000-166720000	Bivalent Enhancer	Fetal Intestine Small	intestine
8	chr6:166719000-166720200	Bivalent Enhancer	Fetal Intestine Large	intestine
9	chr6:166719200-166719400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:166719200-166719400	Enhancers	Liver	Liver
11	chr6:166719200-166719400	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr6:166719200-166719400	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr6:166719200-166719400	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr6:166719200-166719400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
15	chr6:166719200-166719400	Flanking Bivalent TSS/Enh	HepG2	liver
16	chr6:166719200-166720000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:166719200-166720000	Enhancers	GM12878-XiMat	blood
18	chr6:166719200-166722400	Active TSS	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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