Variant report

Variant	rs4609235
Chromosome Location	chr8:121716124-121716125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11995748	0.91[CEU][hapmap]
rs12542152	0.80[ASN][1000 genomes]
rs12542405	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12543043	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12543075	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12543097	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12548040	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4242320	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4304359	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871101	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871103	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871104	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61063678	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73321282	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121706000-121718400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:121706000-121719000	Weak transcription	HSMM	muscle
3	chr8:121706200-121717800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:121706200-121718800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:121706200-121718800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:121706200-121719000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr8:121711600-121718800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:121711600-121722800	Weak transcription	Aorta	Aorta
9	chr8:121712000-121716200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:121712800-121724400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:121713200-121716600	Enhancers	Liver	Liver
12	chr8:121713200-121718600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr8:121713200-121719000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr8:121713600-121716600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr8:121713800-121718400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:121714000-121717000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr8:121714200-121720400	Enhancers	HepG2	liver
18	chr8:121714400-121716800	Enhancers	Placenta	Placenta
19	chr8:121714600-121716200	Enhancers	Fetal Lung	lung
20	chr8:121714600-121718800	Weak transcription	NHLF	lung
21	chr8:121714800-121718400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:121714800-121719000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:121714800-121719200	Weak transcription	Adipose Nuclei	Adipose
24	chr8:121714800-121729400	Weak transcription	Right Atrium	heart
25	chr8:121715000-121716200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr8:121715000-121716400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr8:121715000-121718400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr8:121715000-121719200	Enhancers	Primary T cells from cord blood	blood
29	chr8:121715000-121728200	Weak transcription	Psoas Muscle	Psoas
30	chr8:121715200-121716800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:121715200-121718000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr8:121715200-121718800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr8:121715200-121719000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr8:121715200-121719200	Weak transcription	Fetal Thymus	thymus
35	chr8:121715400-121716600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr8:121715400-121718600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:121715400-121718800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:121715600-121716200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr8:121715600-121716200	Enhancers	Fetal Stomach	stomach
40	chr8:121715600-121716400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:121715600-121719200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:121715800-121716200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr8:121715800-121716200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr8:121715800-121718800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr8:121716000-121716200	Enhancers	Brain Anterior Caudate	brain
46	chr8:121716000-121716200	Enhancers	Fetal Muscle Leg	muscle
47	chr8:121716000-121716200	Enhancers	Gastric	stomach
48	chr8:121716000-121716200	Enhancers	Small Intestine	intestine
49	chr8:121716000-121716200	Enhancers	Stomach Mucosa	stomach

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