Variant report

Variant	rs61063678
Chromosome Location	chr8:121711481-121711482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12542405	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12543043	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12543097	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12548040	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4242320	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4304359	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4609235	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4871101	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4871103	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4871104	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73321282	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121679800-121714600	Weak transcription	Spleen	Spleen
2	chr8:121685400-121714400	Weak transcription	Pancreas	Pancrea
3	chr8:121685600-121714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:121697800-121713600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:121697800-121714400	Weak transcription	Placenta	Placenta
6	chr8:121699800-121714200	Weak transcription	Fetal Thymus	thymus
7	chr8:121703000-121714200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:121704000-121714000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:121704800-121714400	Weak transcription	Psoas Muscle	Psoas
10	chr8:121705200-121715800	Weak transcription	Brain Substantia Nigra	brain
11	chr8:121705400-121711600	Weak transcription	Brain Anterior Caudate	brain
12	chr8:121705400-121711600	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:121705400-121712800	Weak transcription	NHDF-Ad	bronchial
14	chr8:121705400-121715400	Weak transcription	Fetal Kidney	kidney
15	chr8:121706000-121712600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:121706000-121712600	Weak transcription	Primary T cells from cord blood	blood
17	chr8:121706000-121712800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:121706000-121712800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:121706000-121713200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr8:121706000-121713200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr8:121706000-121713400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr8:121706000-121715600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr8:121706000-121718400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:121706000-121719000	Weak transcription	HSMM	muscle
25	chr8:121706200-121712800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:121706200-121713200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:121706200-121713400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:121706200-121713400	Weak transcription	NHLF	lung
29	chr8:121706200-121713600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr8:121706200-121713600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr8:121706200-121714200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr8:121706200-121714400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:121706200-121714400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:121706200-121714400	Weak transcription	Gastric	stomach
35	chr8:121706200-121714400	Weak transcription	Lung	lung
36	chr8:121706200-121714600	Weak transcription	Fetal Stomach	stomach
37	chr8:121706200-121717800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr8:121706200-121718800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:121706200-121718800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr8:121706200-121719000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr8:121709200-121715800	Weak transcription	Small Intestine	intestine
42	chr8:121710800-121711600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr8:121710800-121712000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr8:121711000-121711600	ZNF genes & repeats	Liver	Liver
45	chr8:121711000-121711800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:121711000-121712800	Strong transcription	HepG2	liver
47	chr8:121711200-121711600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr8:121711200-121711600	ZNF genes & repeats	Aorta	Aorta
49	chr8:121711200-121711800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
50	chr8:121711400-121711600	ZNF genes & repeats	Adipose Nuclei	Adipose

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