Variant report

Variant	rs4613718
Chromosome Location	chr5:44649944-44649945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1048758	0.87[JPT][hapmap]
rs1061310	0.87[JPT][hapmap]
rs10805686	0.94[ASN][1000 genomes]
rs10941677	0.94[ASN][1000 genomes]
rs11741772	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs11746506	0.81[JPT][hapmap]
rs11949847	0.87[JPT][hapmap]
rs12516900	0.96[ASN][1000 genomes]
rs12522626	0.91[ASN][1000 genomes]
rs12651949	0.80[JPT][hapmap]
rs13155698	0.84[JPT][hapmap]
rs13159598	0.82[JPT][hapmap]
rs13174122	0.82[JPT][hapmap]
rs13177711	0.87[JPT][hapmap]
rs13189120	0.84[JPT][hapmap]
rs1371025	0.86[JPT][hapmap]
rs1438819	0.82[JPT][hapmap]
rs1438820	0.87[JPT][hapmap]
rs1438827	0.87[JPT][hapmap]
rs1866406	0.83[JPT][hapmap]
rs2013513	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2218080	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2218081	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3761648	0.83[JPT][hapmap]
rs3761650	0.87[JPT][hapmap]
rs4321755	0.97[ASN][1000 genomes]
rs4415084	0.94[ASN][1000 genomes]
rs4457089	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs4463188	0.96[ASN][1000 genomes]
rs4492118	0.97[ASN][1000 genomes]
rs6868232	0.83[JPT][hapmap]
rs6872254	0.87[JPT][hapmap]
rs6890556	0.97[ASN][1000 genomes]
rs6896350	0.86[JPT][hapmap]
rs714130	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7716571	0.87[JPT][hapmap]
rs7717459	0.84[JPT][hapmap]
rs7720787	0.87[JPT][hapmap]
rs7735881	0.97[ASN][1000 genomes]
rs920329	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9637783	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830278	chr5:44540863-44713312	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv537742	chr5:44620084-44664039	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv880457	chr5:44632008-44800665	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44645600-44654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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